myRT

myRT report for GCA_003312035.1_ASM331203v1

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Seq: QKKI01000035.1 Vibrio sp. 2016V-1018 2016V_1018_contig35, whole genome shotgun sequence (39862 bp)
Overview 1 RT 1: 16348-26409 bp Neighborhood of RT #1 [16348, 26435] SIR2_2 YjgR YjgR RVT-UG5 COG0610 DUF45 Feature: gene Location: 16348-17439 bp Feature: domain Description: SIR2_2 Location: 16768-17269 bp Feature: domain Description: SIR2_2 Location: 1 6768-1 7269 bp Feature: gene Location: 17441-19180 bp Feature: domain Description: YjgR Location: 17891-18086 bp Feature: domain Description: YjgR Location: 1 7891 -1 8086 bp Feature: domain Description: YjgR Location: 18503-19112 bp Feature: domain Description: YjgR Location: 1 8503-1 91 1 2 bp Feature: gene Location: 19408-22347 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 19897-20353 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 9897-20353 bp Feature: gene Location: 22390-25671 bp Feature: domain Description: COG0610 Location: 22417-25510 bp Feature: domain Description: COG061 0 Location: 2241 7-2551 0 bp Feature: gene Location: 25686-26435 bp Feature: domain Description: DUF45 Location: 25791-26409 bp Feature: domain Description: DUF45 Location: 25791 -26409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), YjgR (COG0433), RVT-UG5, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863)

Seq: QKKI01000006.1 Vibrio sp. 2016V-1018 2016V_1018_contig6, whole genome shotgun sequence (223851 bp)
Overview 1 RT 1: 64120-69748 bp Neighborhood of RT #1 [64120, 69748] groEL RVT_N RVT-GII GIIM HNHc DUF2188 Feature: gene Location: 64120-65754 bp Feature: domain Description: groEL Location: 64126-65749 bp Feature: domain Description: groEL Location: 6412 6-65749 bp Feature: gene Location: 66416-66688 bp Feature: gene Location: 66848-68524 bp Feature: domain Description: RVT_N Location: 66920-67163 bp Feature: domain Description: RVT_N Location: 6692 0-67163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67208-67853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672 08-67853 bp Feature: domain Description: GIIM Note: maturase Location: 67904-68138 bp Feature: domain Description: GIIM Note: maturase Location: 67904-68138 bp Feature: domain Description: HNHc Note: nucleases Location: 68354-68516 bp Feature: domain Description: HNHc Note: nucleases Location: 68354-68516 bp Feature: gene Location: 68631-68858 bp Feature: domain Description: DUF2188 Location: 68649-68829 bp Feature: domain Description: DUF2 188 Location: 68649-6882 9 bp Feature: gene Location: 69188-69748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954)