myRT

myRT report for GCA_003312405.1_ASM331240v1

Download annotations/find similar RTs

Seq: QNUP01000154.1 Enterococcus faecium strain 1584 NODE_154_length_3331_cov_51.7292, whole genome shotgun sequence (3331 bp)
Overview 1 RT 1: 24-2651 bp Neighborhood of RT #1 [24, 3313] HsdM RVT-AbiP2 Feature: gene Location: 24-1502 bp Feature: domain Description: HsdM Location: 45-1470 bp Feature: domain Description: HsdM Location: 45-1 470 bp Feature: gene Location: 1838-3313 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2186-2651 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 21 86-2651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2

Seq: QNUP01000161.1 Enterococcus faecium strain 1584 NODE_161_length_2682_cov_183.924, whole genome shotgun sequence (2682 bp)
Overview 1 RT 1: 745-1744 bp Neighborhood of RT #1 [745, 2571] RVT-GII Feature: gene Location: 745-2571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QNUP01000177.1 Enterococcus faecium strain 1584 NODE_177_length_1903_cov_351.647, whole genome shotgun sequence (1903 bp)
Overview 1 RT 1: 77-1286 bp Neighborhood of RT #1 [77, 1465] RVT-GII GIIM Feature: gene Location: 77-1465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398-1013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 98-1013 bp Feature: domain Description: GIIM Note: maturase Location: 1070-1286 bp Feature: domain Description: GIIM Note: maturase Location: 1070-1286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QNUP01000041.1 Enterococcus faecium strain 1584 NODE_41_length_23469_cov_57.303, whole genome shotgun sequence (23469 bp)
Overview 1 RT 1: 2024-6776 bp Neighborhood of RT #1 [2024, 6865] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 2024-2521 bp Feature: domain Description: ArdA Location: 2042-2507 bp Feature: domain Description: ArdA Location: 204 2-2507 bp Feature: gene Location: 2638-2805 bp Feature: gene Location: 2966-4876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3299-4037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3299-4 037 bp Feature: domain Description: HNHc Note: nucleases Location: 4592-4757 bp Feature: domain Description: HNHc Note: nucleases Location: 4 592-4 757 bp Feature: gene Location: 5385-5534 bp Feature: gene Location: 5660-6865 bp Feature: domain Description: HTH_XRE Location: 5705-5849 bp Feature: domain Description: HTH_XRE Location: 5705-584 9 bp Feature: domain Description: Rol_Rep_N Location: 5876-6143 bp Feature: domain Description: Rol_Rep_N Location: 5876-614 3 bp Feature: domain Description: Rep_trans Location: 6167-6776 bp Feature: domain Description: Rep_trans Location: 6167-6776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)