myRT

myRT report for GCA_003313305.1_ASM331330v1

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Seq: QMDO01000001.1 Vallitalea guaymasensis strain L81 L81_Ga0082380_11, whole genome shotgun sequence (4350534 bp)
Overview 1 RT 1: 39-2851 bp 2 RT 2: 7648-14011 bp 3 RT 3: 72890-86039 bp 4 RT 4: 541780-546503 bp 5 RT 5: 1303415-1308114 bp 6 RT 6: 2178469-2185617 bp 7 RT 7: 2648499-2650981 bp 8 RT 8: 3209398-3214917 bp 9 RT 9: 4154374-4158389 bp Neighborhood of RT #1 [39, 2856] RVT-GII RVT-GII RVT-GII GH_101_like Neighborhood of RT #2 [7648, 14067] PRK01362 YhjR RVT-GII GIIM Peptidase_M6 BID_2 PPC Neighborhood of RT #3 [72890, 86044] PRK09183 COG4584 RVT-GII GH_101_like Glyco_hydro_129 DUF5107 TPR TPR_19 TPR TPR PRK01362 YhjR RVT-GII GIIM WrbA Neighborhood of RT #4 [541780, 546964] GDPD_like_3 RVT-GII GIIM FlxA Neighborhood of RT #5 [1303415, 1308114] ETF_beta SCAD_SBCAD RVT-GII GIIM Neighborhood of RT #6 [2178469, 2190803] SLH SLH Big_5 Big_5 Big_5 Big_5 PepX_N RVT-GII GIIM PepX_N Neighborhood of RT #7 [2648499, 2651142] Colicin_V Colicin_V RVT-GII GIIM Neighborhood of RT #8 [3209398, 3214949] GdhA RVT-GII GIIM TrxB ybbN Sulf_transp Neighborhood of RT #9 [4154374, 4158389] LemA RVT-GII GIIM Feature: gene Location: 39-200 bp Feature: gene Location: 252-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255-396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255-396 bp Feature: gene Location: 424-666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-655 bp Feature: gene Location: 686-1261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1127-1256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 27-1 256 bp Feature: gene Location: 1746-2132 bp Feature: gene Location: 2137-2856 bp Feature: domain Description: GH_101_like Location: 2317-2851 bp Feature: domain Description: GH_1 01 _like Location: 231 7-2851 bp Feature: gene Location: 7648-8292 bp Feature: domain Description: PRK01362 Location: 7651-8287 bp Feature: domain Description: PRK01 362 Location: 7651 -8287 bp Feature: gene Location: 8473-8661 bp Feature: domain Description: YhjR Location: 8482-8650 bp Feature: domain Description: YhjR Location: 8482-8650 bp Feature: gene Location: 8834-10246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9185-9806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 85-9806 bp Feature: domain Description: GIIM Note: maturase Location: 9860-10085 bp Feature: domain Description: GIIM Note: maturase Location: 9860-1 0085 bp Feature: gene Location: 10457-10687 bp Feature: gene Location: 11005-14067 bp Feature: domain Description: Peptidase_M6 Location: 11110-13057 bp Feature: domain Description: Peptidase_M6 Location: 1 1 1 1 0-1 3057 bp Feature: domain Description: BID_2 Location: 13465-13666 bp Feature: domain Description: BID_2 Location: 1 3465-1 3666 bp Feature: domain Description: PPC Location: 13819-14011 bp Feature: domain Description: PPC Location: 1 381 9-1 401 1 bp Feature: gene Location: 72890-73654 bp Feature: domain Description: PRK09183 Location: 72902-73637 bp Feature: domain Description: PRK091 83 Location: 72902-73637 bp Feature: gene Location: 73641-74918 bp Feature: domain Description: COG4584 Location: 74046-74424 bp Feature: domain Description: COG4584 Location: 74046-74424 bp Feature: gene Location: 74970-75983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75411-75957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7541 1 -75957 bp Feature: gene Location: 76386-78275 bp Feature: domain Description: GH_101_like Location: 77259-77901 bp Feature: domain Description: GH_1 01 _like Location: 77259-77901 bp Feature: domain Description: Glyco_hydro_129 Location: 77952-78204 bp Feature: domain Description: Glyco_hydro_1 29 Location: 77952-78204 bp Feature: gene Location: 78309-81269 bp Feature: domain Description: DUF5107 Location: 78420-79287 bp Feature: domain Description: DUF51 07 Location: 78420-79287 bp Feature: domain Description: TPR Location: 79695-79959 bp Feature: domain Description: TPR Location: 79695-79959 bp Feature: domain Description: TPR_19 Location: 80067-80175 bp Feature: domain Description: TPR_1 9 Location: 80067-801 75 bp Feature: domain Description: TPR Location: 80520-80781 bp Feature: domain Description: TPR Location: 80520-80781 bp Feature: domain Description: TPR Location: 81030-81153 bp Feature: domain Description: TPR Location: 81 030-81 1 53 bp Feature: gene Location: 82402-83046 bp Feature: domain Description: PRK01362 Location: 82405-83041 bp Feature: domain Description: PRK01 362 Location: 82405-83041 bp Feature: gene Location: 83227-83415 bp Feature: domain Description: YhjR Location: 83236-83404 bp Feature: domain Description: YhjR Location: 83236-83404 bp Feature: gene Location: 83588-85000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83939-84560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83939-84560 bp Feature: domain Description: GIIM Note: maturase Location: 84614-84839 bp Feature: domain Description: GIIM Note: maturase Location: 8461 4-84839 bp Feature: gene Location: 85211-85414 bp Feature: gene Location: 85475-86044 bp Feature: domain Description: WrbA Location: 85478-86039 bp Feature: domain Description: WrbA Location: 85478-86039 bp Feature: gene Location: 541780-542889 bp Feature: gene Location: 543355-544086 bp Feature: domain Description: GDPD_like_3 Location: 543376-544066 bp Feature: domain Description: GDPD_like_3 Location: 543376-544066 bp Feature: gene Location: 544314-545726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 544665-545286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 544665-545286 bp Feature: domain Description: GIIM Note: maturase Location: 545340-545565 bp Feature: domain Description: GIIM Note: maturase Location: 545340-545565 bp Feature: gene Location: 545937-546140 bp Feature: gene Location: 546185-546964 bp Feature: domain Description: FlxA Location: 546245-546503 bp Feature: domain Description: FlxA Location: 546245-546503 bp Feature: gene Location: 1303415-1304209 bp Feature: domain Description: ETF_beta Location: 1303496-1304015 bp Feature: domain Description: ETF_beta Location: 1 303496-1 30401 5 bp Feature: gene Location: 1304250-1305485 bp Feature: domain Description: SCAD_SBCAD Location: 1304370-1305468 bp Feature: domain Description: SCAD_SBCAD Location: 1 304370-1 305468 bp Feature: gene Location: 1306047-1307459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1306398-1307019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 306398-1 30701 9 bp Feature: domain Description: GIIM Note: maturase Location: 1307073-1307298 bp Feature: domain Description: GIIM Note: maturase Location: 1 307073-1 307298 bp Feature: gene Location: 1307670-1307993 bp Feature: gene Location: 1307932-1308114 bp Feature: gene Location: 2178469-2180718 bp Feature: domain Description: SLH Location: 2178556-2178646 bp Feature: domain Description: SLH Location: 21 78556-21 78646 bp Feature: domain Description: SLH Location: 2178721-2178832 bp Feature: domain Description: SLH Location: 21 78721 -21 78832 bp Feature: domain Description: Big_5 Location: 2179162-2179369 bp Feature: domain Description: Big_5 Location: 21 791 62-21 79369 bp Feature: domain Description: Big_5 Location: 2179810-2180038 bp Feature: domain Description: Big_5 Location: 21 7981 0-21 80038 bp Feature: domain Description: Big_5 Location: 2180116-2180383 bp Feature: domain Description: Big_5 Location: 21 801 1 6-21 80383 bp Feature: domain Description: Big_5 Location: 2180446-2180668 bp Feature: domain Description: Big_5 Location: 21 80446-21 80668 bp Feature: gene Location: 2180821-2182968 bp Feature: domain Description: PepX_N Location: 2181187-2181415 bp Feature: domain Description: PepX_N Location: 21 81 1 87-21 81 41 5 bp Feature: gene Location: 2183144-2184556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2183495-2184116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 83495-21 841 1 6 bp Feature: domain Description: GIIM Note: maturase Location: 2184170-2184395 bp Feature: domain Description: GIIM Note: maturase Location: 21 841 70-21 84395 bp Feature: gene Location: 2184767-2184970 bp Feature: gene Location: 2185020-2190803 bp Feature: domain Description: PepX_N Location: 2185383-2185617 bp Feature: domain Description: PepX_N Location: 21 85383-21 8561 7 bp Feature: gene Location: 2648499-2649203 bp Feature: domain Description: Colicin_V Location: 2648511-2648661 bp Feature: domain Description: Colicin_V Location: 264851 1 -2648661 bp Feature: domain Description: Colicin_V Location: 2648883-2649147 bp Feature: domain Description: Colicin_V Location: 2648883-26491 47 bp Feature: gene Location: 2649316-2649519 bp Feature: gene Location: 2649730-2651142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2650081-2650702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2650081 -2650702 bp Feature: domain Description: GIIM Note: maturase Location: 2650756-2650981 bp Feature: domain Description: GIIM Note: maturase Location: 2650756-2650981 bp Feature: gene Location: 3209398-3210657 bp Feature: domain Description: GdhA Location: 3209419-3210652 bp Feature: domain Description: GdhA Location: 320941 9-321 0652 bp Feature: gene Location: 3210954-3211154 bp Feature: gene Location: 3211365-3212648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3211716-3212337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 1 71 6-321 2337 bp Feature: domain Description: GIIM Note: maturase Location: 3212391-3212616 bp Feature: domain Description: GIIM Note: maturase Location: 321 2391 -321 261 6 bp Feature: gene Location: 3212925-3214166 bp Feature: domain Description: TrxB Location: 3212949-3213870 bp Feature: domain Description: TrxB Location: 321 2949-321 3870 bp Feature: domain Description: ybbN Location: 3213885-3214137 bp Feature: domain Description: ybbN Location: 321 3885-321 41 37 bp Feature: gene Location: 3214392-3214949 bp Feature: domain Description: Sulf_transp Location: 3214422-3214917 bp Feature: domain Description: Sulf_transp Location: 321 4422-321 491 7 bp Feature: gene Location: 4154374-4154931 bp Feature: domain Description: LemA Location: 4154383-4154908 bp Feature: domain Description: LemA Location: 41 54383-41 54908 bp Feature: gene Location: 4154997-4155224 bp Feature: gene Location: 4155435-4156847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4155786-4156407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 55786-41 56407 bp Feature: domain Description: GIIM Note: maturase Location: 4156461-4156686 bp Feature: domain Description: GIIM Note: maturase Location: 41 56461 -41 56686 bp Feature: gene Location: 4157092-4157502 bp Feature: gene Location: 4157514-4158389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GH_101_like (cl21639), PRK01362 (fructose-6-phosphate aldolase), YhjR (COG1633), GIIM (pfam08388), Peptidase_M6 (pfam05547), BID_2 (smart00635), PPC (pfam04151), PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )
Glyco_hydro_129 (pfam11308), DUF5107 (pfam17128), TPR (smart00028), TPR_19 (pfam14559), WrbA (COG0655), GDPD_like_3 (cd08585), FlxA (pfam14282), ETF_beta (cd01714), SCAD_SBCAD (cd01158), SLH (pfam00395)
Big_5 (pfam13205), PepX_N (smart00940), Colicin_V (pfam02674), GdhA (COG0334), TrxB (COG0492), ybbN (cd02956), Sulf_transp (pfam04143), LemA (pfam04011)

Seq: QMDO01000002.1 Vallitalea guaymasensis strain L81 L81_Ga0082380_12, whole genome shotgun sequence (1433504 bp)
Overview 1 RT 1: 3731-10023 bp 2 RT 2: 44983-49571 bp 3 RT 3: 707735-711293 bp Neighborhood of RT #1 [3731, 10023] Peptidase_M6 Big_2 PPC RVT-GII GIIM XerC Neighborhood of RT #2 [44983, 49571] DUF2313 RVT-DGRs Neighborhood of RT #3 [707735, 711304] DUF378 RVT-GII GIIM MgsA Feature: gene Location: 3731-6091 bp Feature: domain Description: Peptidase_M6 Location: 3743-5081 bp Feature: domain Description: Peptidase_M6 Location: 3743-5081 bp Feature: domain Description: Big_2 Location: 5561-5687 bp Feature: domain Description: Big_2 Location: 5561-5687 bp Feature: domain Description: PPC Location: 5843-6035 bp Feature: domain Description: PPC Location: 5843-6035 bp Feature: gene Location: 6409-6639 bp Feature: gene Location: 6850-8262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7201-7822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 01-782 2 bp Feature: domain Description: GIIM Note: maturase Location: 7876-8101 bp Feature: domain Description: GIIM Note: maturase Location: 7876-8101 bp Feature: gene Location: 8345-9361 bp Feature: domain Description: XerC Location: 8678-9344 bp Feature: domain Description: XerC Location: 8678-9344 bp Feature: gene Location: 9502-10023 bp Feature: gene Location: 44983-45600 bp Feature: domain Description: DUF2313 Location: 45001-45418 bp Feature: domain Description: DUF2 313 Location: 45001-45418 bp Feature: gene Location: 45616-47628 bp Feature: gene Location: 47963-49021 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48170-48776 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48170-48776 bp Feature: gene Location: 49022-49291 bp Feature: gene Location: 49443-49571 bp Feature: gene Location: 707735-707944 bp Feature: domain Description: DUF378 Location: 707753-707921 bp Feature: domain Description: DUF378 Location: 707753-70792 1 bp Feature: gene Location: 707983-708186 bp Feature: gene Location: 708397-709809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708748-709369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708748-709369 bp Feature: domain Description: GIIM Note: maturase Location: 709423-709648 bp Feature: domain Description: GIIM Note: maturase Location: 70942 3-709648 bp Feature: gene Location: 710385-710804 bp Feature: gene Location: 710906-711304 bp Feature: domain Description: MgsA Location: 710912-711293 bp Feature: domain Description: MgsA Location: 710912 -7112 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M6 (pfam05547), Big_2 (pfam02368), PPC (pfam04151), RVT-GII, GIIM (pfam08388), XerC (COG4973), DUF2313 (pfam10076), RVT-DGRs, DUF378 (pfam04070), MgsA (COG1803)

Seq: QMDO01000004.1 Vallitalea guaymasensis strain L81 L81_Ga0082380_14, whole genome shotgun sequence (214707 bp)
Overview 1 RT 1: 64069-70270 bp Neighborhood of RT #1 [64069, 70296] PHP_HisPPase RVT-GII GIIM PRK09419 COG5438 Feature: gene Location: 64069-64830 bp Feature: domain Description: PHP_HisPPase Location: 64078-64561 bp Feature: domain Description: PHP_HisPPase Location: 64078-64561 bp Feature: gene Location: 64914-65117 bp Feature: gene Location: 65328-66740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65679-66300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65679-663 00 bp Feature: domain Description: GIIM Note: maturase Location: 66354-66579 bp Feature: domain Description: GIIM Note: maturase Location: 663 54-66579 bp Feature: gene Location: 67042-69057 bp Feature: domain Description: PRK09419 Location: 67252-69016 bp Feature: domain Description: PRK09419 Location: 67252-69016 bp Feature: gene Location: 69136-70296 bp Feature: domain Description: COG5438 Location: 69172-70270 bp Feature: domain Description: COG543 8 Location: 69172-70270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHP_HisPPase (cd07432), RVT-GII, GIIM (pfam08388), PRK09419 (multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase), COG5438 (Uncharacterized membrane protein )