myRT

myRT report for GCA_003313465.1_ASM331346v1

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Seq: KZ845663.1 Thermoflavimicrobium sp. FBKL4.011 genomic scaffold scaffold1, whole genome shotgun sequence (730946 bp)
Overview 1 RT 1: 448782-455975 bp Neighborhood of RT #1 [448782, 455989] DegV RelE UvrD UvrD RVT-UG12 STKc_PknB_like OmpR Feature: gene Location: 448782-449639 bp Feature: domain Description: DegV Location: 448800-449613 bp Feature: domain Description: DegV Location: 448800-44961 3 bp Feature: gene Location: 449699-451825 bp Feature: domain Description: RelE Location: 449708-449966 bp Feature: domain Description: RelE Location: 449708-449966 bp Feature: domain Description: UvrD Location: 450440-451550 bp Feature: domain Description: UvrD Location: 450440-451 550 bp Feature: domain Description: UvrD Location: 451586-451787 bp Feature: domain Description: UvrD Location: 451 586-451 787 bp Feature: gene Location: 452037-453554 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 452367-452817 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 452367-45281 7 bp Feature: gene Location: 453909-455063 bp Feature: domain Description: STKc_PknB_like Location: 453936-454710 bp Feature: domain Description: STKc_PknB_like Location: 453936-45471 0 bp Feature: gene Location: 455276-455989 bp Feature: domain Description: OmpR Location: 455291-455975 bp Feature: domain Description: OmpR Location: 455291 -455975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DegV (TIGR00762), RelE (pfam06296), UvrD (COG0210), RVT-UG12, STKc_PknB_like (cd14014), OmpR (COG0745)

Seq: KZ845668.1 Thermoflavimicrobium sp. FBKL4.011 genomic scaffold scaffold6, whole genome shotgun sequence (216205 bp)
Overview 1 RT 1: 140827-146870 bp Neighborhood of RT #1 [140827, 146870] nucleoid_noc BcsQ RVT-GII KOG4768 nucleoid_noc Feature: gene Location: 140827-141705 bp Feature: domain Description: nucleoid_noc Location: 140917-141532 bp Feature: domain Description: nucleoid_noc Location: 140917-141532 bp Feature: gene Location: 141698-142372 bp Feature: domain Description: BcsQ Location: 141704-142364 bp Feature: domain Description: BcsQ Location: 141704-142 364 bp Feature: gene Location: 142605-143867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142836-143427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 836-14342 7 bp Feature: domain Description: KOG4768 Location: 143508-143745 bp Feature: domain Description: KOG4768 Location: 143508-143745 bp Feature: gene Location: 145603-146421 bp Feature: domain Description: nucleoid_noc Location: 145660-146419 bp Feature: domain Description: nucleoid_noc Location: 145660-146419 bp Feature: gene Location: 146718-146870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nucleoid_noc (TIGR04285), BcsQ (COG1192), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: KZ845671.1 Thermoflavimicrobium sp. FBKL4.011 genomic scaffold scaffold9, whole genome shotgun sequence (129081 bp)
Overview 1 RT 1: 43414-52281 bp Neighborhood of RT #1 [43414, 52289] CotE COOH-NH2_lig RVT-GII Intron_maturas2 PRK05399 mutL Feature: gene Location: 43414-43989 bp Feature: domain Description: CotE Location: 43444-43969 bp Feature: domain Description: CotE Location: 43 444-43 969 bp Feature: gene Location: 44105-45496 bp Feature: domain Description: COOH-NH2_lig Location: 44714-45470 bp Feature: domain Description: COOH-NH2_lig Location: 44714-45470 bp Feature: gene Location: 46237-47601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46498-47116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46498-47116 bp Feature: domain Description: Intron_maturas2 Location: 47149-47446 bp Feature: domain Description: Intron_maturas2 Location: 47149-47446 bp Feature: gene Location: 47798-50305 bp Feature: domain Description: PRK05399 Location: 47801-50300 bp Feature: domain Description: PRK053 99 Location: 47801-503 00 bp Feature: gene Location: 50382-52289 bp Feature: domain Description: mutL Location: 50391-52281 bp Feature: domain Description: mutL Location: 503 91-52281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CotE (pfam10628), COOH-NH2_lig (pfam14395), RVT-GII, Intron_maturas2 (pfam01348), PRK05399 (DNA mismatch repair protein MutS; Provisional), mutL (PRK00095)

Seq: KZ845672.1 Thermoflavimicrobium sp. FBKL4.011 genomic scaffold scaffold10, whole genome shotgun sequence (110573 bp)
Overview 1 RT 1: 59563-66296 bp Neighborhood of RT #1 [59563, 66553] AcrR PRK11431 RVT-Retrons HEAT HEAT Feature: gene Location: 59563-60144 bp Feature: domain Description: AcrR Location: 59569-60064 bp Feature: domain Description: AcrR Location: 59569-60064 bp Feature: gene Location: 60241-60564 bp Feature: domain Description: PRK11431 Location: 60244-60550 bp Feature: domain Description: PRK114 31 Location: 6024 4 -60550 bp Feature: gene Location: 60970-62433 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61549-62167 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6154 9-62167 bp Feature: gene Location: 62439-64085 bp Feature: gene Location: 64109-66553 bp Feature: domain Description: HEAT Location: 65165-65297 bp Feature: domain Description: HEAT Location: 65165-65297 bp Feature: domain Description: HEAT Location: 65966-66296 bp Feature: domain Description: HEAT Location: 65966-66296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), PRK11431 (quaternary ammonium compound efflux SMR transporter SugE), RVT-Retrons, HEAT (sd00044)

Seq: KZ845693.1 Thermoflavimicrobium sp. FBKL4.011 genomic scaffold scaffold31, whole genome shotgun sequence (2968 bp)
Overview 1 RT 1: 19-2957 bp Neighborhood of RT #1 [19, 2965] DDE_Tnp_Tn3 RVT-GII Intron_maturas2 HNHc DDE_Tnp_Tn3 Feature: gene Location: 19-411 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 169-352 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 169-35 2 bp Feature: gene Location: 808-2616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072-1888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072-1888 bp Feature: domain Description: Intron_maturas2 Location: 1999-2263 bp Feature: domain Description: Intron_maturas2 Location: 1999-2263 bp Feature: domain Description: HNHc Note: nucleases Location: 2416-2587 bp Feature: domain Description: HNHc Note: nucleases Location: 2416-25 87 bp Feature: gene Location: 2711-2965 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2714-2957 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2714-295 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)