myRT

myRT report for GCA_003317105.1_ASM331710v1

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Seq: NFSF01000104.1 Escherichia coli strain CVAST2647 NODE_108_length_1477_cov_183.42, whole genome shotgun sequence (1477 bp)
Overview 1 RT 1: 93-1230 bp Neighborhood of RT #1 [93, 1475] RVT-GII GIIM Feature: gene Location: 93-1475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225-957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225-957 bp Feature: domain Description: GIIM Note: maturase Location: 1032-1230 bp Feature: domain Description: GIIM Note: maturase Location: 1 032-1 230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NFSF01000018.1 Escherichia coli strain CVAST2647 NODE_18_length_94122_cov_80.3213, whole genome shotgun sequence (94122 bp)
Overview 1 RT 1: 925-4395 bp Neighborhood of RT #1 [925, 4502] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 925-1227 bp Feature: domain Description: Arm-DNA-bind_3 Location: 934-1186 bp Feature: domain Description: Arm-DNA-bind_3 Location: 934-1186 bp Feature: gene Location: 1411-1656 bp Feature: gene Location: 1682-2614 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1784-2378 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1784-2 378 bp Feature: gene Location: 2616-3602 bp Feature: gene Location: 4230-4502 bp Feature: domain Description: PRK09678 Location: 4239-4395 bp Feature: domain Description: PRK09678 Location: 42 39-4395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), Arm-DNA-bind_3 (pfam13356)

Seq: NFSF01000082.1 Escherichia coli strain CVAST2647 NODE_82_length_5263_cov_104.702, whole genome shotgun sequence (5263 bp)
Overview 1 RT 1: 453-3641 bp Neighborhood of RT #1 [453, 3646] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 453-662 bp Feature: gene Location: 797-2698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064-1895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064-1895 bp Feature: domain Description: Intron_maturas2 Location: 2009-2267 bp Feature: domain Description: Intron_maturas2 Location: 2009-2267 bp Feature: domain Description: HNHc Note: nucleases Location: 2441-2603 bp Feature: domain Description: HNHc Note: nucleases Location: 2441-2603 bp Feature: gene Location: 2893-3345 bp Feature: domain Description: PRK13732 Location: 2899-3343 bp Feature: domain Description: PRK13 73 2 Location: 2899-3 3 43 bp Feature: gene Location: 3413-3646 bp Feature: domain Description: DUF905 Location: 3443-3641 bp Feature: domain Description: DUF905 Location: 3 443 -3 641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)