myRT

myRT report for GCA_003317595.1_ASM331759v1

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Seq: NFTL01000022.1 Escherichia coli strain CVAST0472 NODE_22_length_59799_cov_48.9607, whole genome shotgun sequence (59799 bp)
Overview 1 RT 1: 13470-17352 bp Neighborhood of RT #1 [13470, 17357] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 13470-13928 bp Feature: domain Description: dut Location: 13476-13923 bp Feature: domain Description: dut Location: 1 3476-1 3923 bp Feature: gene Location: 14035-14631 bp Feature: domain Description: slmA Location: 14041-14617 bp Feature: domain Description: slmA Location: 1 4041 -1 461 7 bp Feature: gene Location: 14677-15636 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14812-15361 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 481 2-1 5361 bp Feature: gene Location: 15934-16590 bp Feature: domain Description: pyrE Location: 15952-16585 bp Feature: domain Description: pyrE Location: 1 5952-1 6585 bp Feature: gene Location: 16641-17357 bp Feature: domain Description: rph Location: 16644-17352 bp Feature: domain Description: rph Location: 1 6644-1 7352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NFTL01000025.1 Escherichia coli strain CVAST0472 NODE_25_length_55982_cov_53.5169, whole genome shotgun sequence (55982 bp)
Overview 1 RT 1: 27291-30346 bp Neighborhood of RT #1 [27291, 30346] RVT-GII RVT-GII GIIM Feature: gene Location: 27291-28196 bp Feature: gene Location: 28334-28525 bp Feature: gene Location: 28682-29221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29012-29090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9012 -2 9090 bp Feature: gene Location: 29249-29770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29255-29537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 55-2 9537 bp Feature: domain Description: GIIM Note: maturase Location: 29585-29765 bp Feature: domain Description: GIIM Note: maturase Location: 2 9585-2 9765 bp Feature: gene Location: 29869-30048 bp Feature: gene Location: 30158-30346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NFTL01000041.1 Escherichia coli strain CVAST0472 NODE_41_length_17225_cov_53.1865, whole genome shotgun sequence (17225 bp)
Overview 1 RT 1: 2-1932 bp Neighborhood of RT #1 [2, 1940] RVT-GII Asparaginase_2 Feature: gene Location: 2-385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245-347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245-3 47 bp Feature: gene Location: 433-582 bp Feature: gene Location: 909-1940 bp Feature: domain Description: Asparaginase_2 Location: 999-1932 bp Feature: domain Description: Asparaginase_2 Location: 999-193 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112)