myRT

myRT report for GCA_003317675.1_ASM331767v1

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Seq: NFTR01000017.1 Escherichia coli strain CVAST0273 NODE_17_length_74530_cov_65.3576, whole genome shotgun sequence (74530 bp)
Overview 1 RT 1: 59215-63086 bp Neighborhood of RT #1 [59215, 63086] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 59215-59754 bp Feature: gene Location: 59824-60726 bp Feature: domain Description: DUF1281 Location: 59893-60421 bp Feature: domain Description: DUF1 281 Location: 59893-60421 bp Feature: domain Description: DUF1281_C Location: 60427-60667 bp Feature: domain Description: DUF1 281 _C Location: 60427-60667 bp Feature: gene Location: 60803-62527 bp Feature: domain Description: RVT_N Location: 60860-61097 bp Feature: domain Description: RVT_N Location: 60860-61 097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61148-61796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 1 48-61 796 bp Feature: domain Description: YkfC Location: 61928-62084 bp Feature: domain Description: YkfC Location: 61 928-62084 bp Feature: domain Description: HNHc Note: nucleases Location: 62312-62471 bp Feature: domain Description: HNHc Note: nucleases Location: 6231 2-62471 bp Feature: gene Location: 62568-62708 bp Feature: gene Location: 62790-63086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: NFTR01000022.1 Escherichia coli strain CVAST0273 NODE_22_length_56235_cov_54.8753, whole genome shotgun sequence (56235 bp)
Overview 1 RT 1: 9906-13788 bp Neighborhood of RT #1 [9906, 13793] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9906-10364 bp Feature: domain Description: dut Location: 9912-10359 bp Feature: domain Description: dut Location: 9912 -10359 bp Feature: gene Location: 10471-11067 bp Feature: domain Description: slmA Location: 10477-11053 bp Feature: domain Description: slmA Location: 10477-11053 bp Feature: gene Location: 11113-12072 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11248-11797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 112 48-11797 bp Feature: gene Location: 12370-13026 bp Feature: domain Description: pyrE Location: 12388-13021 bp Feature: domain Description: pyrE Location: 12 388-1302 1 bp Feature: gene Location: 13077-13793 bp Feature: domain Description: rph Location: 13080-13788 bp Feature: domain Description: rph Location: 13080-13788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NFTR01000052.1 Escherichia coli strain CVAST0273 NODE_52_length_19625_cov_55.1752, whole genome shotgun sequence (19625 bp)
Overview 1 RT 1: 2-1603 bp Neighborhood of RT #1 [2, 1603] RVT-GII RVT-GII GIIM Feature: gene Location: 2-478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269-347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269-3 47 bp Feature: gene Location: 506-1027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-794 bp Feature: domain Description: GIIM Note: maturase Location: 842-1022 bp Feature: domain Description: GIIM Note: maturase Location: 842-1022 bp Feature: gene Location: 1126-1305 bp Feature: gene Location: 1415-1603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NFTR01000056.1 Escherichia coli strain CVAST0273 NODE_56_length_17225_cov_56.2455, whole genome shotgun sequence (17225 bp)
Overview 1 RT 1: 2-1932 bp Neighborhood of RT #1 [2, 1940] RVT-GII Asparaginase_2 Feature: gene Location: 2-385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245-347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 5-34 7 bp Feature: gene Location: 433-582 bp Feature: gene Location: 909-1940 bp Feature: domain Description: Asparaginase_2 Location: 999-1932 bp Feature: domain Description: Asparaginase_2 Location: 999-1932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112)

Seq: NFTR01000098.1 Escherichia coli strain CVAST0273 NODE_98_length_2344_cov_111.804, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-15 73 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1624-185 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)