myRT

myRT report for GCA_003317715.1_ASM331771v1

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Seq: NFTS01000026.1 Escherichia coli strain CVAST2732 NODE_26_length_56188_cov_62.1087, whole genome shotgun sequence (56065 bp)
Overview 1 RT 1: 9736-13618 bp Neighborhood of RT #1 [9736, 13623] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9736-10194 bp Feature: domain Description: dut Location: 9742-10189 bp Feature: domain Description: dut Location: 9742-1 01 89 bp Feature: gene Location: 10301-10897 bp Feature: domain Description: slmA Location: 10307-10883 bp Feature: domain Description: slmA Location: 1 0307-1 0883 bp Feature: gene Location: 10943-11902 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11078-11627 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 078-1 1 627 bp Feature: gene Location: 12200-12856 bp Feature: domain Description: pyrE Location: 12218-12851 bp Feature: domain Description: pyrE Location: 1 221 8-1 2851 bp Feature: gene Location: 12907-13623 bp Feature: domain Description: rph Location: 12910-13618 bp Feature: domain Description: rph Location: 1 291 0-1 361 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NFTS01000053.1 Escherichia coli strain CVAST2732 NODE_53_length_19625_cov_60.387, whole genome shotgun sequence (19625 bp)
Overview 1 RT 1: 2-1603 bp Neighborhood of RT #1 [2, 1603] RVT-GII RVT-GII GIIM Feature: gene Location: 2-478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269-347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 69-347 bp Feature: gene Location: 506-1027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512 -794 bp Feature: domain Description: GIIM Note: maturase Location: 842-1022 bp Feature: domain Description: GIIM Note: maturase Location: 842 -102 2 bp Feature: gene Location: 1126-1305 bp Feature: gene Location: 1415-1603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NFTS01000057.1 Escherichia coli strain CVAST2732 NODE_57_length_17225_cov_60.519, whole genome shotgun sequence (17225 bp)
Overview 1 RT 1: 2-1932 bp Neighborhood of RT #1 [2, 1940] RVT-GII Asparaginase_2 Feature: gene Location: 2-385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245-347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245-3 47 bp Feature: gene Location: 433-582 bp Feature: gene Location: 909-1940 bp Feature: domain Description: Asparaginase_2 Location: 999-1932 bp Feature: domain Description: Asparaginase_2 Location: 999-193 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112)

Seq: NFTS01000094.1 Escherichia coli strain CVAST2732 NODE_95_length_2344_cov_110.095, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: domain Description: RVT_N Location: 64 3-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1624 -1858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)