myRT

myRT report for GCA_003318175.1_ASM331817v1

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Seq: QOCD01000064.1 Vibrionales bacterium C3R12 C3R12_contig_20, whole genome shotgun sequence (274132 bp)
Overview 1 RT 1: 5355-9891 bp Neighborhood of RT #1 [5355, 9896] Lambda_Bor RVT_N RVT-GII GIIM COG3547 MarR Feature: gene Location: 5355-5654 bp Feature: domain Description: Lambda_Bor Location: 5412-5646 bp Feature: domain Description: Lambda_Bor Location: 541 2-5646 bp Feature: gene Location: 5665-5811 bp Feature: gene Location: 6020-7651 bp Feature: domain Description: RVT_N Location: 6227-6470 bp Feature: domain Description: RVT_N Location: 6227-6470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6515-7142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651 5-71 42 bp Feature: domain Description: GIIM Note: maturase Location: 7202-7427 bp Feature: domain Description: GIIM Note: maturase Location: 7202-7427 bp Feature: gene Location: 8305-9405 bp Feature: domain Description: COG3547 Location: 8392-9361 bp Feature: domain Description: COG3547 Location: 8392-9361 bp Feature: gene Location: 9498-9896 bp Feature: domain Description: MarR Location: 9522-9891 bp Feature: domain Description: MarR Location: 9522-9891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lambda_Bor (pfam06291), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), MarR (pfam01047)

Seq: QOCD01000038.1 Vibrionales bacterium C3R12 C3R12_contig_25, whole genome shotgun sequence (208527 bp)
Overview 1 RT 1: 171463-177731 bp Neighborhood of RT #1 [171463, 177760] GMP_PMI ManB RVT-GII GIIM UDP_G4E_4_SDR_e WcaJ Feature: gene Location: 171463-172881 bp Feature: domain Description: GMP_PMI Location: 171469-172870 bp Feature: domain Description: GMP_PMI Location: 171469-172 870 bp Feature: gene Location: 172888-174315 bp Feature: domain Description: ManB Location: 172930-174283 bp Feature: domain Description: ManB Location: 172 930-1742 83 bp Feature: gene Location: 174819-176144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175098-175755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175098-175755 bp Feature: domain Description: GIIM Note: maturase Location: 175839-176052 bp Feature: domain Description: GIIM Note: maturase Location: 175839-176052 bp Feature: gene Location: 176301-177212 bp Feature: domain Description: UDP_G4E_4_SDR_e Location: 176307-177189 bp Feature: domain Description: UDP_G4E_4_SDR_e Location: 176307-177189 bp Feature: gene Location: 177212-177760 bp Feature: domain Description: WcaJ Location: 177218-177731 bp Feature: domain Description: WcaJ Location: 1772 18-177731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GMP_PMI (TIGR01479), ManB (COG1109), RVT-GII, GIIM (pfam08388), UDP_G4E_4_SDR_e (cd05232), WcaJ (COG2148)

Seq: QOCD01000020.1 Vibrionales bacterium C3R12 C3R12_contig_35, whole genome shotgun sequence (34350 bp)
Overview 1 RT 1: 100-3474 bp Neighborhood of RT #1 [100, 3474] StbD ParE_toxin RVT-GII GIIM Feature: gene Location: 100-357 bp Feature: domain Description: StbD Location: 103-322 bp Feature: domain Description: StbD Location: 103 -3 22 bp Feature: gene Location: 345-647 bp Feature: domain Description: ParE_toxin Location: 357-618 bp Feature: domain Description: ParE_toxin Location: 3 57-618 bp Feature: gene Location: 752-2215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1151-1769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1151-1769 bp Feature: domain Description: GIIM Note: maturase Location: 1814-2021 bp Feature: domain Description: GIIM Note: maturase Location: 1814-2021 bp Feature: gene Location: 2672-2815 bp Feature: gene Location: 2842-3474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbD (COG2161), ParE_toxin (pfam05016), RVT-GII, GIIM (pfam08388)

Seq: QOCD01000026.1 Vibrionales bacterium C3R12 C3R12_contig_43, whole genome shotgun sequence (3907 bp)
Overview 1 RT 1: 532-3604 bp Neighborhood of RT #1 [532, 3786] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 532-1476 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 646-1237 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 64 6-1237 bp Feature: gene Location: 1469-3109 bp Feature: domain Description: COG3950 Location: 1667-3017 bp Feature: domain Description: COG3950 Location: 1667-3017 bp Feature: gene Location: 3115-3786 bp Feature: domain Description: TIGR02646 Location: 3205-3604 bp Feature: domain Description: TIGR0264 6 Location: 3205-3604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: QOCD01000019.1 Vibrionales bacterium C3R12 C3R12_contig_6, whole genome shotgun sequence (90676 bp)
Overview 1 RT 1: 87574-90226 bp Neighborhood of RT #1 [87574, 90450] Inovirus_Gp2 AlpA RVT_N RVT-GII GIIM Feature: gene Location: 87574-88257 bp Feature: domain Description: Inovirus_Gp2 Location: 87808-88120 bp Feature: domain Description: Inovirus_Gp2 Location: 87808-88120 bp Feature: gene Location: 88386-88550 bp Feature: domain Description: AlpA Location: 88389-88548 bp Feature: domain Description: AlpA Location: 88389-885 48 bp Feature: gene Location: 88819-90450 bp Feature: domain Description: RVT_N Location: 89026-89269 bp Feature: domain Description: RVT_N Location: 89026-89269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89314-89941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89314-89941 bp Feature: domain Description: GIIM Note: maturase Location: 90001-90226 bp Feature: domain Description: GIIM Note: maturase Location: 90001-90226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), AlpA (COG3311), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QOCD01000050.1 Vibrionales bacterium C3R12 C3R12_contig_69, whole genome shotgun sequence (2165 bp)
Overview 1 RT 1: 579-1827 bp Neighborhood of RT #1 [579, 2051] RVT_N RVT-GII GIIM Feature: gene Location: 579-2051 bp Feature: domain Description: RVT_N Location: 627-870 bp Feature: domain Description: RVT_N Location: 6 27-870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1542 bp Feature: domain Description: GIIM Note: maturase Location: 1602-1827 bp Feature: domain Description: GIIM Note: maturase Location: 16 02-1827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QOCD01000062.1 Vibrionales bacterium C3R12 C3R12_contig_7, whole genome shotgun sequence (385279 bp)
Overview 1 RT 1: 352042-360750 bp Neighborhood of RT #1 [352042, 360803] TniQ RVT-UG1 RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like HsdM Feature: gene Location: 352042-353253 bp Feature: domain Description: TniQ Location: 352057-352510 bp Feature: domain Description: TniQ Location: 352057 -352510 bp Feature: gene Location: 353352-353819 bp Feature: gene Location: 353816-357484 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 354437-354923 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 354437 -354923 bp Feature: gene Location: 357502-359286 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 357832-358402 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 357 832-358402 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 358705-359263 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 3587 05-359263 bp Feature: gene Location: 359286-360803 bp Feature: domain Description: HsdM Location: 359292-360750 bp Feature: domain Description: HsdM Location: 359292-3607 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TniQ (pfam06527), RVT-UG1, RMtype1_S_SonII-TRD2-CR2_like (cd17246), HsdM (COG0286)