myRT

myRT report for GCA_003319015.1_ASM331901v1

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Seq: QOEM01000215.1 Escherichia coli strain AVC252 scaffold_214, whole genome shotgun sequence (3060 bp)
Overview 1 RT 1: 1-2994 bp Neighborhood of RT #1 [1, 3059] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1-336 bp Feature: domain Description: PHA02517 Location: 4-337 bp Feature: domain Description: PHA0251 7 Location: 4-337 bp Feature: gene Location: 453-1976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726-1458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726-1 458 bp Feature: domain Description: GIIM Note: maturase Location: 1533-1731 bp Feature: domain Description: GIIM Note: maturase Location: 1 533-1 731 bp Feature: gene Location: 2568-3059 bp Feature: domain Description: PHA02517 Location: 2640-2994 bp Feature: domain Description: PHA0251 7 Location: 2640-2994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: QOEM01000046.1 Escherichia coli strain AVC252 scaffold_45, whole genome shotgun sequence (35294 bp)
Overview 1 RT 1: 9631-13513 bp Neighborhood of RT #1 [9631, 13518] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9631-10089 bp Feature: domain Description: dut Location: 9637-10084 bp Feature: domain Description: dut Location: 9637-10084 bp Feature: gene Location: 10196-10792 bp Feature: domain Description: slmA Location: 10202-10778 bp Feature: domain Description: slmA Location: 102 02 -10778 bp Feature: gene Location: 10838-11797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10973-11522 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10973-1152 2 bp Feature: gene Location: 12095-12751 bp Feature: domain Description: pyrE Location: 12113-12746 bp Feature: domain Description: pyrE Location: 12 113-12 746 bp Feature: gene Location: 12802-13518 bp Feature: domain Description: rph Location: 12805-13513 bp Feature: domain Description: rph Location: 12 805-13513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)

Seq: QOEM01000094.1 Escherichia coli strain AVC252 scaffold_93, whole genome shotgun sequence (16965 bp)
Overview 1 RT 1: 14776-16963 bp Neighborhood of RT #1 [14776, 16962] DUF932 RVT-Retrons Feature: gene Location: 14776-15195 bp Feature: gene Location: 15279-16100 bp Feature: domain Description: DUF932 Location: 15390-16065 bp Feature: domain Description: DUF93 2 Location: 153 90-16065 bp Feature: gene Location: 16351-16962 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16489-16963 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16489-16963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-Retrons