myRT

myRT report for GCA_003321585.1_ASM332158v1

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Seq: PUQK01000004.1 Escherichia coli strain GER_MD90_1604_Eco_099 EC-BIM099-S25-VE-xxx-2016-033-PK_S22_60, whole genome shotgun sequence (402600 bp)
Overview 1 RT 1: 364182-372576 bp Neighborhood of RT #1 [364182, 372576] AAA_15 AAA_15 RVT-Retrons Feature: gene Location: 364182-364415 bp Feature: gene Location: 364561-366678 bp Feature: domain Description: AAA_15 Location: 364564-364981 bp Feature: domain Description: AAA_1 5 Location: 364564-364981 bp Feature: domain Description: AAA_15 Location: 365119-365545 bp Feature: domain Description: AAA_1 5 Location: 3651 1 9-365545 bp Feature: gene Location: 366851-367951 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 366995-367556 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 366995-367556 bp Feature: gene Location: 368422-372261 bp Feature: gene Location: 372418-372576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons

Seq: PUQK01000022.1 Escherichia coli strain GER_MD90_1604_Eco_099 EC-BIM099-S25-VE-xxx-2016-033-PK_S22_78, whole genome shotgun sequence (36362 bp)
Overview 1 RT 1: 16869-20984 bp Neighborhood of RT #1 [16869, 20984] rve_2 RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 16869-17021 bp Feature: domain Description: rve_2 Location: 16899-17007 bp Feature: domain Description: rve_2 Location: 16899-17007 bp Feature: gene Location: 17294-17599 bp Feature: gene Location: 17642-19030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17972-18590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17972 -18590 bp Feature: domain Description: GIIM Note: maturase Location: 18638-18869 bp Feature: domain Description: GIIM Note: maturase Location: 18638-18869 bp Feature: gene Location: 19417-20808 bp Feature: domain Description: InsG Location: 19420-20341 bp Feature: domain Description: InsG Location: 1942 0-2 0341 bp Feature: domain Description: Transposase_20 Location: 20464-20710 bp Feature: domain Description: Transposase_2 0 Location: 2 0464-2 0710 bp Feature: gene Location: 20817-20984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371)

Seq: PUQK01000026.1 Escherichia coli strain GER_MD90_1604_Eco_099 EC-BIM099-S25-VE-xxx-2016-033-PK_S22_82, whole genome shotgun sequence (26147 bp)
Overview 1 RT 1: 6440-9470 bp Neighborhood of RT #1 [6440, 9520] RVT-GII COG3547 COG3547 Feature: gene Location: 6440-6640 bp Feature: gene Location: 6648-6788 bp Feature: gene Location: 6822-8279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7230-7917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723 0-7917 bp Feature: gene Location: 8518-8913 bp Feature: domain Description: COG3547 Location: 8536-8827 bp Feature: domain Description: COG3 547 Location: 853 6-8827 bp Feature: gene Location: 8972-9520 bp Feature: domain Description: COG3547 Location: 8984-9470 bp Feature: domain Description: COG3 547 Location: 8984-9470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase )

Seq: PUQK01000027.1 Escherichia coli strain GER_MD90_1604_Eco_099 EC-BIM099-S25-VE-xxx-2016-033-PK_S22_83, whole genome shotgun sequence (10702 bp)
Overview 1 RT 1: 2-7770 bp Neighborhood of RT #1 [2, 7793] FHA_bHelix FHA_bHelix RVT-GII RVT-GII PHA02517 COG3436 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 2-595 bp Feature: domain Description: FHA_bHelix Location: 17-251 bp Feature: domain Description: FHA_bHelix Location: 17-251 bp Feature: domain Description: FHA_bHelix Location: 458-569 bp Feature: domain Description: FHA_bHelix Location: 4 58-569 bp Feature: gene Location: 882-1085 bp Feature: gene Location: 1206-2018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1479-1935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 79-1935 bp Feature: gene Location: 2034-2408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2040-2211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204 0-2211 bp Feature: gene Location: 2415-2831 bp Feature: gene Location: 2893-3051 bp Feature: domain Description: PHA02517 Location: 2896-2998 bp Feature: domain Description: PHA02517 Location: 2896-2998 bp Feature: gene Location: 4407-5483 bp Feature: domain Description: COG3436 Location: 4719-5190 bp Feature: domain Description: COG34 36 Location: 4 719-5190 bp Feature: gene Location: 5459-5848 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5564-5807 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5564 -5807 bp Feature: gene Location: 6300-7010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6501-7002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6501-7002 bp Feature: gene Location: 7159-7530 bp Feature: domain Description: GIIM Note: maturase Location: 7231-7453 bp Feature: domain Description: GIIM Note: maturase Location: 7231-74 53 bp Feature: gene Location: 7647-7793 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7659-7770 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7659-7770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, FHA_bHelix (sd00046), PHA02517 (putative transposase OrfB; Reviewed), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)