myRT

myRT report for GCA_003321805.1_ASM332180v1

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Seq: PUQU01000020.1 Escherichia coli strain GER_CD72_1507_Eco_081 EC-BIM081-S7-VE-xxx-2015-033-PK_S14_161, whole genome shotgun sequence (89466 bp)
Overview 1 RT 1: 16338-20991 bp Neighborhood of RT #1 [16338, 21218] SLATT_5 RVT-UG17 Peptidase_S74 Feature: gene Location: 16338-16478 bp Feature: gene Location: 16491-17042 bp Feature: domain Description: SLATT_5 Location: 16497-17013 bp Feature: domain Description: SLATT_5 Location: 1 6497-1 701 3 bp Feature: gene Location: 17020-18390 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 17248-17854 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 7248-1 7854 bp Feature: gene Location: 18471-18803 bp Feature: gene Location: 18828-21218 bp Feature: domain Description: Peptidase_S74 Location: 20844-20991 bp Feature: domain Description: Peptidase_S74 Location: 20844-20991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Peptidase_S74 (pfam13884)

Seq: PUQU01000032.1 Escherichia coli strain GER_CD72_1507_Eco_081 EC-BIM081-S7-VE-xxx-2015-033-PK_S14_173, whole genome shotgun sequence (47174 bp)
Overview 1 RT 1: 21909-25792 bp Neighborhood of RT #1 [21909, 25797] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 21909-22625 bp Feature: domain Description: rph Location: 21912-22620 bp Feature: domain Description: rph Location: 2 1912 -2 2 62 0 bp Feature: gene Location: 22677-23333 bp Feature: domain Description: pyrE Location: 22695-23328 bp Feature: domain Description: pyrE Location: 2 2 695-2 332 8 bp Feature: gene Location: 23631-24590 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23766-24315 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 3766-2 4315 bp Feature: gene Location: 24636-25232 bp Feature: domain Description: slmA Location: 24642-25218 bp Feature: domain Description: slmA Location: 2 4642 -2 52 18 bp Feature: gene Location: 25339-25797 bp Feature: domain Description: dut Location: 25345-25792 bp Feature: domain Description: dut Location: 2 5345-2 5792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: PUQU01000054.1 Escherichia coli strain GER_CD72_1507_Eco_081 EC-BIM081-S7-VE-xxx-2015-033-PK_S14_195, whole genome shotgun sequence (14800 bp)
Overview 1 RT 1: 10492-14732 bp Neighborhood of RT #1 [10492, 14797] COG3547 RVT-GII GIIM PHA02517 Feature: gene Location: 10492-11538 bp Feature: domain Description: COG3547 Location: 10501-11422 bp Feature: domain Description: COG3 547 Location: 10501-11422 bp Feature: gene Location: 11817-12023 bp Feature: gene Location: 12110-13633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12383-13115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 83 -13 115 bp Feature: domain Description: GIIM Note: maturase Location: 13190-13388 bp Feature: domain Description: GIIM Note: maturase Location: 13 190-13 3 88 bp Feature: gene Location: 13587-14012 bp Feature: gene Location: 14225-14797 bp Feature: domain Description: PHA02517 Location: 14396-14732 bp Feature: domain Description: PHA02517 Location: 143 96-1473 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)