myRT

myRT report for GCA_003322225.1_ASM332222v1

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Seq: PUSD01000018.1 Escherichia coli strain GER_MD14_1505_Eco_043 EC-BIM043-43-VE-DEU-2015-033-PK_S58_205, whole genome shotgun sequence (95687 bp)
Overview 1 RT 1: 47894-51776 bp Neighborhood of RT #1 [47894, 51781] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 47894-48352 bp Feature: domain Description: dut Location: 47900-48347 bp Feature: domain Description: dut Location: 47900-48347 bp Feature: gene Location: 48459-49055 bp Feature: domain Description: slmA Location: 48465-49041 bp Feature: domain Description: slmA Location: 48465-49041 bp Feature: gene Location: 49101-50060 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49236-49785 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49236-49785 bp Feature: gene Location: 50358-51014 bp Feature: domain Description: pyrE Location: 50376-51009 bp Feature: domain Description: pyrE Location: 50376-51 009 bp Feature: gene Location: 51065-51781 bp Feature: domain Description: rph Location: 51068-51776 bp Feature: domain Description: rph Location: 51 068-51 776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PUSD01000035.1 Escherichia coli strain GER_MD14_1505_Eco_043 EC-BIM043-43-VE-DEU-2015-033-PK_S58_222, whole genome shotgun sequence (27067 bp)
Overview 1 RT 1: 25505-26934 bp Neighborhood of RT #1 [25505, 27065] RVT-GII GIIM RVT-GII Feature: gene Location: 25505-25675 bp Feature: gene Location: 25813-25992 bp Feature: gene Location: 26091-26612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26097-26379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6097-2 6379 bp Feature: domain Description: GIIM Note: maturase Location: 26427-26607 bp Feature: domain Description: GIIM Note: maturase Location: 2 642 7-2 6607 bp Feature: gene Location: 26640-27065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26856-26934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6856-2 6934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PUSD01000044.1 Escherichia coli strain GER_MD14_1505_Eco_043 EC-BIM043-43-VE-DEU-2015-033-PK_S58_231, whole genome shotgun sequence (15313 bp)
Overview 1 RT 1: 12670-15132 bp Neighborhood of RT #1 [12670, 15311] DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII Feature: gene Location: 12670-13188 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12688-13033 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12688-13 03 3 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13054-13165 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13 054-13 165 bp Feature: gene Location: 13323-13535 bp Feature: domain Description: PHA02517 Location: 13326-13470 bp Feature: domain Description: PHA02517 Location: 13 3 26-13 470 bp Feature: gene Location: 14127-15311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14400-15132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14400-1513 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: PUSD01000047.1 Escherichia coli strain GER_MD14_1505_Eco_043 EC-BIM043-43-VE-DEU-2015-033-PK_S58_234, whole genome shotgun sequence (13830 bp)
Overview 1 RT 1: 3-1882 bp Neighborhood of RT #1 [3, 1890] RVT-GII Asparaginase_2 Feature: gene Location: 3-335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195-297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195-297 bp Feature: gene Location: 383-532 bp Feature: gene Location: 859-1890 bp Feature: domain Description: Asparaginase_2 Location: 949-1882 bp Feature: domain Description: Asparaginase_2 Location: 94 9-1882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112)