myRT

myRT report for GCA_003322305.1_ASM332230v1

Download annotations/find similar RTs

Seq: PUSH01000017.1 Escherichia coli strain GER_MD17_1505_Eco_039 EC-BIM039-39-VE-DEU-2015-033-PK_S54_211, whole genome shotgun sequence (95647 bp)
Overview 1 RT 1: 47854-51736 bp Neighborhood of RT #1 [47854, 51741] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 47854-48312 bp Feature: domain Description: dut Location: 47860-48307 bp Feature: domain Description: dut Location: 47860-48307 bp Feature: gene Location: 48419-49015 bp Feature: domain Description: slmA Location: 48425-49001 bp Feature: domain Description: slmA Location: 48425-49001 bp Feature: gene Location: 49061-50020 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49196-49745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 491 96-49745 bp Feature: gene Location: 50318-50974 bp Feature: domain Description: pyrE Location: 50336-50969 bp Feature: domain Description: pyrE Location: 50336-50969 bp Feature: gene Location: 51025-51741 bp Feature: domain Description: rph Location: 51028-51736 bp Feature: domain Description: rph Location: 51 028-51 736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PUSH01000034.1 Escherichia coli strain GER_MD17_1505_Eco_039 EC-BIM039-39-VE-DEU-2015-033-PK_S54_228, whole genome shotgun sequence (26978 bp)
Overview 1 RT 1: 25416-26845 bp Neighborhood of RT #1 [25416, 26976] RVT-GII GIIM RVT-GII Feature: gene Location: 25416-25586 bp Feature: gene Location: 25724-25903 bp Feature: gene Location: 26002-26523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26008-26290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6008-2 62 90 bp Feature: domain Description: GIIM Note: maturase Location: 26338-26518 bp Feature: domain Description: GIIM Note: maturase Location: 2 6338-2 6518 bp Feature: gene Location: 26551-26976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26767-26845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6767-2 6845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PUSH01000043.1 Escherichia coli strain GER_MD17_1505_Eco_039 EC-BIM039-39-VE-DEU-2015-033-PK_S54_237, whole genome shotgun sequence (15313 bp)
Overview 1 RT 1: 12670-15132 bp Neighborhood of RT #1 [12670, 15311] DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII Feature: gene Location: 12670-13188 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12688-13033 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12688-13 03 3 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13054-13165 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13 054-13 165 bp Feature: gene Location: 13323-13535 bp Feature: domain Description: PHA02517 Location: 13326-13470 bp Feature: domain Description: PHA02517 Location: 13 3 26-13 470 bp Feature: gene Location: 14127-15311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14400-15132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14400-1513 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: PUSH01000045.1 Escherichia coli strain GER_MD17_1505_Eco_039 EC-BIM039-39-VE-DEU-2015-033-PK_S54_239, whole genome shotgun sequence (13830 bp)
Overview 1 RT 1: 3-1882 bp Neighborhood of RT #1 [3, 1890] RVT-GII Asparaginase_2 Feature: gene Location: 3-335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195-297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195-297 bp Feature: gene Location: 383-532 bp Feature: gene Location: 859-1890 bp Feature: domain Description: Asparaginase_2 Location: 949-1882 bp Feature: domain Description: Asparaginase_2 Location: 94 9-1882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112)