myRT

myRT report for GCA_003322425.1_ASM332242v1

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Seq: PUSL01000024.1 Escherichia coli strain GER_MD08_1505_Eco_035 EC-BIM035-35-VE-DEU-2015-033-PK_S50_301, whole genome shotgun sequence (70443 bp)
Overview 1 RT 1: 49099-52981 bp Neighborhood of RT #1 [49099, 52986] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49099-49557 bp Feature: domain Description: dut Location: 49105-49552 bp Feature: domain Description: dut Location: 491 05-49552 bp Feature: gene Location: 49664-50260 bp Feature: domain Description: slmA Location: 49670-50246 bp Feature: domain Description: slmA Location: 49670-50246 bp Feature: gene Location: 50306-51265 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50441-50990 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50441 -50990 bp Feature: gene Location: 51563-52219 bp Feature: domain Description: pyrE Location: 51581-52214 bp Feature: domain Description: pyrE Location: 51 581 -5221 4 bp Feature: gene Location: 52270-52986 bp Feature: domain Description: rph Location: 52273-52981 bp Feature: domain Description: rph Location: 52273-52981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PUSL01000066.1 Escherichia coli strain GER_MD08_1505_Eco_035 EC-BIM035-35-VE-DEU-2015-033-PK_S50_343, whole genome shotgun sequence (8729 bp)
Overview 1 RT 1: 5428-8536 bp Neighborhood of RT #1 [5428, 8601] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 5428-5727 bp Feature: gene Location: 5711-6157 bp Feature: domain Description: PHA02517 Location: 5714-6155 bp Feature: domain Description: PHA02 517 Location: 5714-6155 bp Feature: gene Location: 6274-7797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6547-7279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6547-72 79 bp Feature: domain Description: GIIM Note: maturase Location: 7354-7552 bp Feature: domain Description: GIIM Note: maturase Location: 7354-7552 bp Feature: gene Location: 7751-8176 bp Feature: gene Location: 8389-8601 bp Feature: domain Description: PHA02517 Location: 8392-8536 bp Feature: domain Description: PHA02 517 Location: 8392 -8536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)