myRT

myRT report for GCA_003323515.1_ASM332351v1

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Seq: QOJB01000234.1 Enterococcus faecium strain IHC121 IHC121_contig_103_consensus_1, whole genome shotgun sequence (16165 bp)
Overview 1 RT 1: 5192-12785 bp Neighborhood of RT #1 [5192, 12790] RelB_DinJ FtsK_SpoIIIE RVT-GII group_II_RT_mat HNHc RVT-GII HNHc Zeta_toxin Feature: gene Location: 5192-5527 bp Feature: domain Description: RelB_DinJ Location: 5396-5519 bp Feature: domain Description: RelB_DinJ Location: 5396-551 9 bp Feature: gene Location: 5589-6626 bp Feature: domain Description: FtsK_SpoIIIE Location: 6261-6507 bp Feature: domain Description: FtsK_SpoIIIE Location: 6261 -6507 bp Feature: gene Location: 7220-8434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7586-8285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7586-8285 bp Feature: gene Location: 8287-9093 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8299-8503 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8299-8503 bp Feature: domain Description: HNHc Note: nucleases Location: 8815-8980 bp Feature: domain Description: HNHc Note: nucleases Location: 881 5-8980 bp Feature: gene Location: 9195-9353 bp Feature: gene Location: 9719-9949 bp Feature: gene Location: 10068-11927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10377-11118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0377-1 1 1 1 8 bp Feature: domain Description: HNHc Note: nucleases Location: 11673-11811 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 673-1 1 81 1 bp Feature: gene Location: 12021-12263 bp Feature: gene Location: 12350-12790 bp Feature: domain Description: Zeta_toxin Location: 12428-12785 bp Feature: domain Description: Zeta_toxin Location: 1 2428-1 2785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII, group_II_RT_mat (TIGR04416), HNHc (smart00507), Zeta_toxin (pfam06414)

Seq: QOJB01000262.1 Enterococcus faecium strain IHC121 IHC121_contig_104_consensus_1, whole genome shotgun sequence (26573 bp)
Overview 1 RT 1: 1898-7456 bp Neighborhood of RT #1 [1898, 7464] Dcm FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 1898-3040 bp Feature: domain Description: Dcm Location: 1901-3014 bp Feature: domain Description: Dcm Location: 1901-3014 bp Feature: gene Location: 3085-3465 bp Feature: domain Description: FtsK Location: 3100-3340 bp Feature: domain Description: FtsK Location: 3100-3340 bp Feature: gene Location: 3567-5441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3933-4629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3933-462 9 bp Feature: domain Description: HNHc Note: nucleases Location: 5169-5328 bp Feature: domain Description: HNHc Note: nucleases Location: 5169-532 8 bp Feature: gene Location: 6035-7066 bp Feature: domain Description: FtsK_SpoIIIE Location: 6707-6947 bp Feature: domain Description: FtsK_SpoIIIE Location: 6707-6947 bp Feature: gene Location: 7120-7464 bp Feature: domain Description: RelB_DinJ Location: 7330-7456 bp Feature: domain Description: RelB_DinJ Location: 7330-7456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), FtsK (COG1674), RVT-GII, HNHc (smart00507), FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384)

Seq: QOJB01000119.1 Enterococcus faecium strain IHC121 IHC121_contig_117_consensus_1, whole genome shotgun sequence (3257 bp)
Overview 1 RT 1: 3-3241 bp Neighborhood of RT #1 [3, 3255] RVT-AbiP2 HsdM Feature: gene Location: 3-1457 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 330-795 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 3 0-795 bp Feature: gene Location: 1795-3255 bp Feature: domain Description: HsdM Location: 1816-3241 bp Feature: domain Description: HsdM Location: 1816-3 241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)

Seq: QOJB01000185.1 Enterococcus faecium strain IHC121 IHC121_contig_171_consensus_1, whole genome shotgun sequence (9089 bp)
Overview 1 RT 1: 5618-8250 bp Neighborhood of RT #1 [5618, 8369] ArdA RVT-GII HNHc Feature: gene Location: 5618-6118 bp Feature: domain Description: ArdA Location: 5636-6107 bp Feature: domain Description: ArdA Location: 5636-6107 bp Feature: gene Location: 6131-6283 bp Feature: gene Location: 6459-8369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6792-7530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6792-7530 bp Feature: domain Description: HNHc Note: nucleases Location: 8085-8250 bp Feature: domain Description: HNHc Note: nucleases Location: 8085-8250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507)