myRT

myRT report for GCA_003323695.1_ASM332369v1

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Seq: QOJV01000025.1 Enterococcus faecium strain IHC33 IHC33_contig_120_consensus_1, whole genome shotgun sequence (23370 bp)
Overview 1 RT 1: 1988-6740 bp Neighborhood of RT #1 [1988, 6829] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 1988-2485 bp Feature: domain Description: ArdA Location: 2006-2471 bp Feature: domain Description: ArdA Location: 2006-2471 bp Feature: gene Location: 2602-2769 bp Feature: gene Location: 2930-4840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3263-4001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3263-4001 bp Feature: domain Description: HNHc Note: nucleases Location: 4556-4721 bp Feature: domain Description: HNHc Note: nucleases Location: 4556-4721 bp Feature: gene Location: 5349-5498 bp Feature: gene Location: 5624-6829 bp Feature: domain Description: HTH_XRE Location: 5669-5813 bp Feature: domain Description: HTH_XRE Location: 5669-581 3 bp Feature: domain Description: Rol_Rep_N Location: 5840-6107 bp Feature: domain Description: Rol_Rep_N Location: 5840-61 07 bp Feature: domain Description: Rep_trans Location: 6131-6740 bp Feature: domain Description: Rep_trans Location: 61 31 -6740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: QOJV01000041.1 Enterococcus faecium strain IHC33 IHC33_contig_134_consensus_1, whole genome shotgun sequence (2709 bp)
Overview 1 RT 1: 772-1771 bp Neighborhood of RT #1 [772, 2598] RVT-GII Feature: gene Location: 772-2598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072-1771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072 -1771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QOJV01000045.1 Enterococcus faecium strain IHC33 IHC33_contig_138_consensus_1, whole genome shotgun sequence (3460 bp)
Overview 1 RT 1: 3-3428 bp Neighborhood of RT #1 [3, 3457] RVT-AbiP2 HsdM Rve Feature: gene Location: 3-1457 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 330-795 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 3 0-795 bp Feature: gene Location: 1795-3273 bp Feature: domain Description: HsdM Location: 1816-3241 bp Feature: domain Description: HsdM Location: 1816-3 241 bp Feature: gene Location: 3296-3457 bp Feature: domain Description: Rve Location: 3299-3428 bp Feature: domain Description: Rve Location: 3 299-3 428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286), Rve (COG3316)

Seq: QOJV01000260.1 Enterococcus faecium strain IHC33 IHC33_contig_50_consensus_1, whole genome shotgun sequence (56372 bp)
Overview 1 RT 1: 10011-16727 bp Neighborhood of RT #1 [10011, 16924] dha_L_ycgS G6PD_bact RVT-GII GIIM HTH_LacI PBP1_ycjW_transcription_regulator_like AmyAc_Sucrose_phosphorylase-like_1 Feature: gene Location: 10011-10616 bp Feature: domain Description: dha_L_ycgS Location: 10035-10593 bp Feature: domain Description: dha_L_ycgS Location: 10035-10593 bp Feature: gene Location: 10763-11428 bp Feature: domain Description: G6PD_bact Location: 10772-11408 bp Feature: domain Description: G6PD_bact Location: 10772-114 08 bp Feature: gene Location: 11933-13321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12254-12869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12254 -12869 bp Feature: domain Description: GIIM Note: maturase Location: 12926-13142 bp Feature: domain Description: GIIM Note: maturase Location: 12926-1314 2 bp Feature: gene Location: 13939-14976 bp Feature: domain Description: HTH_LacI Location: 13972-14119 bp Feature: domain Description: HTH_LacI Location: 13972-14 119 bp Feature: domain Description: PBP1_ycjW_transcription_regulator_like Location: 14140-14944 bp Feature: domain Description: PBP1_ycjW_transcription_regulator_like Location: 14 14 0-14 94 4 bp Feature: gene Location: 15239-16924 bp Feature: domain Description: AmyAc_Sucrose_phosphorylase-like_1 Location: 15365-16727 bp Feature: domain Description: AmyAc_Sucrose_phosphorylase-like_1 Location: 15365-16727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dha_L_ycgS (TIGR02365), G6PD_bact (pfam10786), RVT-GII, GIIM (pfam08388), HTH_LacI (cd01392), PBP1_ycjW_transcription_regulator_like, AmyAc_Sucrose_phosphorylase-like_1 (cd11356)