myRT

myRT report for GCA_003324275.1_ASM332427v1

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Seq: QMGP01000001.1 Pseudomonas aeruginosa strain AR_0457 AR_457.contig.0_1, whole genome shotgun sequence (7020885 bp)
Overview 1 RT 1: 5197212-5207946 bp 2 RT 2: 5224205-5233054 bp Neighborhood of RT #1 [5197212, 5207948] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [5224205, 5233083] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 5197212-5197547 bp Feature: domain Description: NERD Location: 5197311-5197482 bp Feature: domain Description: NERD Location: 51 9731 1 -51 97482 bp Feature: gene Location: 5197640-5198761 bp Feature: domain Description: COG3177 Location: 5197658-5198750 bp Feature: domain Description: COG31 77 Location: 51 97658-51 98750 bp Feature: gene Location: 5199485-5201170 bp Feature: RT Description: RVT_N Location: 5199542-5199782 bp Feature: RT Description: RVT_N Location: 51 99542-51 99782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5199830-5200466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 99830-5200466 bp Feature: domain Description: GIIM Note: maturase Location: 5200520-5200751 bp Feature: domain Description: GIIM Note: maturase Location: 5200520-5200751 bp Feature: domain Description: HNH Note: nucleases Location: 5201003-5201141 bp Feature: domain Description: HNH Note: nucleases Location: 5201 003-5201 1 41 bp Feature: gene Location: 5202251-5205988 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5202359-5203016 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5202359-520301 6 bp Feature: domain Description: PRK09776 Location: 5203229-5203700 bp Feature: domain Description: PRK09776 Location: 5203229-5203700 bp Feature: domain Description: PAS Location: 5203760-5204282 bp Feature: domain Description: PAS Location: 5203760-5204282 bp Feature: domain Description: PRK10060 Location: 5204291-5205938 bp Feature: domain Description: PRK1 0060 Location: 5204291 -5205938 bp Feature: gene Location: 5206095-5207948 bp Feature: domain Description: PRK05658 Location: 5206107-5207946 bp Feature: domain Description: PRK05658 Location: 52061 07-5207946 bp Feature: gene Location: 5224205-5225419 bp Feature: domain Description: PRK10770 Location: 5224217-5225411 bp Feature: domain Description: PRK1 0770 Location: 522421 7-522541 1 bp Feature: gene Location: 5225478-5228279 bp Feature: domain Description: LptD Location: 5225673-5228265 bp Feature: domain Description: LptD Location: 5225673-5228265 bp Feature: gene Location: 5228412-5230124 bp Feature: RT Description: RVT_N Location: 5228469-5228712 bp Feature: RT Description: RVT_N Location: 5228469-522871 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5228757-5229390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5228757-5229390 bp Feature: domain Description: YkfC Location: 5229603-5229753 bp Feature: domain Description: YkfC Location: 5229603-5229753 bp Feature: domain Description: HNH Note: nucleases Location: 5229930-5230068 bp Feature: domain Description: HNH Note: nucleases Location: 5229930-5230068 bp Feature: gene Location: 5231396-5232412 bp Feature: domain Description: COG3178 Location: 5231399-5232398 bp Feature: domain Description: COG31 78 Location: 5231 399-5232398 bp Feature: gene Location: 5232409-5233083 bp Feature: domain Description: NTP_transferase_like_1 Location: 5232415-5233054 bp Feature: domain Description: NTP_transferase_like_1 Location: 523241 5-5233054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)