myRT

myRT report for GCA_003324315.1_ASM332431v1

Download annotations/find similar RTs

Seq: QMGN01000002.1 Klebsiella pneumoniae strain AR_0454 AR_454.contig.1_1, whole genome shotgun sequence (5383545 bp)
Overview 1 RT 1: 316741-319990 bp 2 RT 2: 660712-664820 bp 3 RT 3: 838107-843984 bp 4 RT 4: 2056928-2061809 bp 5 RT 5: 2503066-2506363 bp Neighborhood of RT #1 [316741, 320382] YbjK int RVT-GII Neighborhood of RT #2 [660712, 664822] DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [838107, 843986] Rve PinE RVT-GII PRK10276 umuC Neighborhood of RT #4 [2056928, 2061814] YccC PRK10016 RVT-GII dacD Neighborhood of RT #5 [2503066, 2506363] Terminase_2 PRK10276 RVT-GII Feature: gene Location: 316741-317304 bp Feature: domain Description: YbjK Location: 316747-317284 bp Feature: domain Description: YbjK Location: 31 6747-31 7284 bp Feature: gene Location: 317427-318479 bp Feature: domain Description: int Location: 317430-318429 bp Feature: domain Description: int Location: 31 7430-31 8429 bp Feature: gene Location: 318895-320382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319300-319990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 9300-31 9990 bp Feature: gene Location: 660712-660954 bp Feature: domain Description: DinI Location: 660763-660943 bp Feature: domain Description: DinI Location: 660763-660943 bp Feature: gene Location: 660969-661115 bp Feature: gene Location: 661569-663056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 661974-662664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 661 974-662664 bp Feature: gene Location: 663135-663554 bp Feature: domain Description: PRK10276 Location: 663138-663549 bp Feature: domain Description: PRK1 0276 Location: 6631 38-663549 bp Feature: gene Location: 663557-664822 bp Feature: domain Description: umuC Location: 663560-664820 bp Feature: domain Description: umuC Location: 663560-664820 bp Feature: gene Location: 838107-838823 bp Feature: domain Description: Rve Location: 838122-838767 bp Feature: domain Description: Rve Location: 8381 22-838767 bp Feature: gene Location: 838829-839338 bp Feature: domain Description: PinE Location: 838877-839330 bp Feature: domain Description: PinE Location: 838877-839330 bp Feature: gene Location: 840733-842220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841138-841828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841 1 38-841 828 bp Feature: gene Location: 842300-842719 bp Feature: domain Description: PRK10276 Location: 842303-842714 bp Feature: domain Description: PRK1 0276 Location: 842303-84271 4 bp Feature: gene Location: 842721-843986 bp Feature: domain Description: umuC Location: 842724-843984 bp Feature: domain Description: umuC Location: 842724-843984 bp Feature: gene Location: 2056928-2057986 bp Feature: domain Description: YccC Location: 2056934-2057972 bp Feature: domain Description: YccC Location: 2056934-2057972 bp Feature: gene Location: 2058085-2058558 bp Feature: domain Description: PRK10016 Location: 2058088-2058547 bp Feature: domain Description: PRK1 001 6 Location: 2058088-2058547 bp Feature: gene Location: 2058640-2060124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2059042-2059732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2059042-2059732 bp Feature: gene Location: 2060133-2060300 bp Feature: gene Location: 2060645-2061814 bp Feature: domain Description: dacD Location: 2060654-2061809 bp Feature: domain Description: dacD Location: 2060654-2061 809 bp Feature: gene Location: 2503066-2503650 bp Feature: domain Description: Terminase_2 Location: 2503111-2503576 bp Feature: domain Description: Terminase_2 Location: 25031 1 1 -2503576 bp Feature: gene Location: 2503708-2504037 bp Feature: domain Description: PRK10276 Location: 2503714-2503855 bp Feature: domain Description: PRK1 0276 Location: 250371 4-2503855 bp Feature: gene Location: 2504117-2505601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2504519-2505209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250451 9-2505209 bp Feature: gene Location: 2505610-2505777 bp Feature: gene Location: 2506025-2506363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), Rve (COG3316), PinE (COG1961), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC)
dacD (PRK11397), Terminase_2 (pfam03592)

Seq: QMGN01000003.1 Klebsiella pneumoniae strain AR_0454 AR_454.contig.2_1, whole genome shotgun sequence (49515 bp)
Overview 1 RT 1: 15826-21045 bp 2 RT 2: 42565-47001 bp Neighborhood of RT #1 [15826, 21059] PRK15442 RVT-GII Cloacin E2R135 Cytotoxic Cloacin_immun Neighborhood of RT #2 [42565, 47009] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 15826-16686 bp Feature: domain Description: PRK15442 Location: 15835-16684 bp Feature: domain Description: PRK15442 Location: 15835-16684 bp Feature: gene Location: 17078-17347 bp Feature: gene Location: 17501-18988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17906-18596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17906-18596 bp Feature: gene Location: 19107-20792 bp Feature: domain Description: Cloacin Location: 19242-20064 bp Feature: domain Description: Cloacin Location: 192 42 -2 0064 bp Feature: domain Description: E2R135 Location: 20073-20478 bp Feature: domain Description: E2 R135 Location: 2 0073-2 0478 bp Feature: domain Description: Cytotoxic Location: 20535-20781 bp Feature: domain Description: Cytotoxic Location: 2 0535-2 0781 bp Feature: gene Location: 20802-21059 bp Feature: domain Description: Cloacin_immun Location: 20808-21045 bp Feature: domain Description: Cloacin_immun Location: 2 0808-2 1045 bp Feature: gene Location: 42565-42942 bp Feature: domain Description: DDE_Tnp_IS1 Location: 42568-42940 bp Feature: domain Description: DDE_Tnp_IS1 Location: 42 568-42 940 bp Feature: gene Location: 42987-43262 bp Feature: domain Description: InsA Location: 42990-43254 bp Feature: domain Description: InsA Location: 42 990-432 54 bp Feature: gene Location: 43414-44901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43819-44509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43819-44509 bp Feature: gene Location: 45055-45738 bp Feature: domain Description: PRK10276 Location: 45358-45721 bp Feature: domain Description: PRK102 76 Location: 45358-4572 1 bp Feature: gene Location: 45738-47009 bp Feature: domain Description: umuC Location: 45741-47001 bp Feature: domain Description: umuC Location: 45741-47001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15442 (beta-lactamase TEM; Provisional), RVT-GII, Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000), Cloacin_immun (pfam03513), DDE_Tnp_IS1 (pfam03400), InsA (COG3677), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)