myRT

myRT report for GCA_003324405.1_ASM332440v1

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Seq: QMGI01000002.1 Pseudomonas aeruginosa strain AR_0241 AR_241.contig.1_1, whole genome shotgun sequence (7079170 bp)
Overview 1 RT 1: 3577962-3584886 bp 2 RT 2: 4089962-4098803 bp 3 RT 3: 4115067-4128988 bp 4 RT 4: 6694099-6699685 bp Neighborhood of RT #1 [3577962, 3584969] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Neighborhood of RT #2 [4089962, 4098811] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #3 [4115067, 4129143] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 IMPa_N_2 IMPa_helical Peptidase_M60 Neighborhood of RT #4 [6694099, 6699685] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 3577962-3579506 bp Feature: domain Description: CHD Location: 3578178-3578592 bp Feature: domain Description: CHD Location: 35781 78-3578592 bp Feature: domain Description: CHD Location: 3578820-3579309 bp Feature: domain Description: CHD Location: 3578820-3579309 bp Feature: gene Location: 3580590-3580769 bp Feature: gene Location: 3581501-3582769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3581714-3582371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3581 71 4-3582371 bp Feature: domain Description: GIIM Note: maturase Location: 3582449-3582671 bp Feature: domain Description: GIIM Note: maturase Location: 3582449-3582671 bp Feature: gene Location: 3583158-3583799 bp Feature: domain Description: DUF772 Location: 3583308-3583503 bp Feature: domain Description: DUF772 Location: 3583308-3583503 bp Feature: gene Location: 3584142-3584969 bp Feature: domain Description: ABC_phnC Location: 3584172-3584886 bp Feature: domain Description: ABC_phnC Location: 35841 72-3584886 bp Feature: gene Location: 4089962-4090636 bp Feature: domain Description: NTP_transferase_like_1 Location: 4089968-4090607 bp Feature: domain Description: NTP_transferase_like_1 Location: 4089968-4090607 bp Feature: gene Location: 4090633-4091649 bp Feature: domain Description: COG3178 Location: 4090636-4091635 bp Feature: domain Description: COG31 78 Location: 4090636-4091 635 bp Feature: gene Location: 4092922-4094634 bp Feature: RT Description: RVT_N Location: 4092979-4093222 bp Feature: RT Description: RVT_N Location: 4092979-4093222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4093267-4093903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4093267-4093903 bp Feature: domain Description: YkfC Location: 4094113-4094263 bp Feature: domain Description: YkfC Location: 40941 1 3-4094263 bp Feature: domain Description: HNH Note: nucleases Location: 4094440-4094578 bp Feature: domain Description: HNH Note: nucleases Location: 4094440-4094578 bp Feature: gene Location: 4094767-4097538 bp Feature: domain Description: LptD Location: 4094962-4097524 bp Feature: domain Description: LptD Location: 4094962-4097524 bp Feature: gene Location: 4097597-4098811 bp Feature: domain Description: PRK10770 Location: 4097609-4098803 bp Feature: domain Description: PRK1 0770 Location: 4097609-4098803 bp Feature: gene Location: 4115067-4116920 bp Feature: domain Description: PRK05658 Location: 4115079-4116918 bp Feature: domain Description: PRK05658 Location: 41 1 5079-41 1 691 8 bp Feature: gene Location: 4117027-4120764 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4117135-4117792 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 41 1 71 35-41 1 7792 bp Feature: domain Description: PRK09776 Location: 4118005-4118476 bp Feature: domain Description: PRK09776 Location: 41 1 8005-41 1 8476 bp Feature: domain Description: PAS Location: 4118533-4119058 bp Feature: domain Description: PAS Location: 41 1 8533-41 1 9058 bp Feature: domain Description: PRK10060 Location: 4119070-4120714 bp Feature: domain Description: PRK1 0060 Location: 41 1 9070-41 2071 4 bp Feature: gene Location: 4121845-4123530 bp Feature: RT Description: RVT_N Location: 4121902-4122142 bp Feature: RT Description: RVT_N Location: 41 21 902-41 221 42 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4122190-4122826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 221 90-41 22826 bp Feature: domain Description: GIIM Note: maturase Location: 4122880-4123111 bp Feature: domain Description: GIIM Note: maturase Location: 41 22880-41 231 1 1 bp Feature: domain Description: HNH Note: nucleases Location: 4123363-4123501 bp Feature: domain Description: HNH Note: nucleases Location: 41 23363-41 23501 bp Feature: gene Location: 4124253-4125374 bp Feature: domain Description: COG3177 Location: 4124271-4125363 bp Feature: domain Description: COG31 77 Location: 41 24271 -41 25363 bp Feature: gene Location: 4126417-4129143 bp Feature: domain Description: IMPa_N_2 Location: 4126624-4127206 bp Feature: domain Description: IMPa_N_2 Location: 41 26624-41 27206 bp Feature: domain Description: IMPa_helical Location: 4127287-4127614 bp Feature: domain Description: IMPa_helical Location: 41 27287-41 2761 4 bp Feature: domain Description: Peptidase_M60 Location: 4128058-4128988 bp Feature: domain Description: Peptidase_M60 Location: 41 28058-41 28988 bp Feature: gene Location: 6694099-6694935 bp Feature: domain Description: HDOD Location: 6694102-6694930 bp Feature: domain Description: HDOD Location: 66941 02-6694930 bp Feature: gene Location: 6695036-6695980 bp Feature: domain Description: YgfZ Location: 6695045-6695945 bp Feature: domain Description: YgfZ Location: 6695045-6695945 bp Feature: gene Location: 6697703-6699022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6697706-6698282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6697706-6698282 bp Feature: domain Description: YkfC Location: 6698480-6698636 bp Feature: domain Description: YkfC Location: 6698480-6698636 bp Feature: domain Description: HNH Note: nucleases Location: 6698819-6698957 bp Feature: domain Description: HNH Note: nucleases Location: 669881 9-6698957 bp Feature: gene Location: 6699098-6699352 bp Feature: domain Description: SdhE Location: 6699104-6699344 bp Feature: domain Description: SdhE Location: 66991 04-6699344 bp Feature: gene Location: 6699491-6699685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315), NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), YkfC (COG3344), HNH (pfam01844)
LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), COG3177 (Fic family protein ), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642)
Peptidase_M60 (pfam13402), HDOD (pfam08668), YgfZ (COG0354), SdhE (COG2938)