myRT

myRT report for GCA_003324695.1_ASM332469v1

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Seq: CP030915.1 Shigella flexneri 2a strain 1508 chromosome (4696723 bp)
Overview 1 RT 1: 5672-8690 bp 2 RT 2: 1241561-1244593 bp 3 RT 3: 2037526-2040857 bp 4 RT 4: 3272129-3279503 bp Neighborhood of RT #1 [5672, 8860] PHA02517 RVT-GII RVT-GII group_II_RT_mat PHA02517 Neighborhood of RT #2 [1241561, 1244658] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [2037526, 2040865] PHA02517 RVT-GII GIIM PHA02517 Inovirus_Gp2 Neighborhood of RT #4 [3272129, 3279568] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 5672-5800 bp Feature: gene Location: 5890-6132 bp Feature: domain Description: PHA02517 Location: 5893-6064 bp Feature: domain Description: PHA0251 7 Location: 5893-6064 bp Feature: gene Location: 6716-7294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6989-7289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6989-7289 bp Feature: gene Location: 7405-7650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7411-7597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741 1 -7597 bp Feature: gene Location: 7665-8159 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7671-7983 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7671 -7983 bp Feature: gene Location: 8393-8860 bp Feature: domain Description: PHA02517 Location: 8468-8690 bp Feature: domain Description: PHA0251 7 Location: 8468-8690 bp Feature: gene Location: 1241561-1241803 bp Feature: domain Description: PHA02517 Location: 1241564-1241792 bp Feature: domain Description: PHA0251 7 Location: 1 241 564-1 241 792 bp Feature: gene Location: 1241847-1242032 bp Feature: gene Location: 1242119-1243465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1242215-1242947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 24221 5-1 242947 bp Feature: domain Description: GIIM Note: maturase Location: 1243022-1243220 bp Feature: domain Description: GIIM Note: maturase Location: 1 243022-1 243220 bp Feature: gene Location: 1243595-1244020 bp Feature: gene Location: 1244233-1244658 bp Feature: domain Description: PHA02517 Location: 1244257-1244593 bp Feature: domain Description: PHA0251 7 Location: 1 244257-1 244593 bp Feature: gene Location: 2037526-2037807 bp Feature: domain Description: PHA02517 Location: 2037532-2037742 bp Feature: domain Description: PHA0251 7 Location: 2037532-2037742 bp Feature: gene Location: 2038099-2038374 bp Feature: gene Location: 2038398-2039921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2038671-2039403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2038671 -2039403 bp Feature: domain Description: GIIM Note: maturase Location: 2039478-2039676 bp Feature: domain Description: GIIM Note: maturase Location: 2039478-2039676 bp Feature: gene Location: 2040098-2040484 bp Feature: domain Description: PHA02517 Location: 2040101-2040482 bp Feature: domain Description: PHA0251 7 Location: 20401 01 -2040482 bp Feature: gene Location: 2040524-2040865 bp Feature: domain Description: Inovirus_Gp2 Location: 2040593-2040857 bp Feature: domain Description: Inovirus_Gp2 Location: 2040593-2040857 bp Feature: gene Location: 3272129-3276247 bp Feature: domain Description: ESPR Location: 3272132-3272201 bp Feature: domain Description: ESPR Location: 32721 32-3272201 bp Feature: domain Description: Peptidase_S6 Location: 3272282-3274454 bp Feature: domain Description: Peptidase_S6 Location: 3272282-3274454 bp Feature: domain Description: autotrans_barl Location: 3275018-3276245 bp Feature: domain Description: autotrans_barl Location: 327501 8-3276245 bp Feature: gene Location: 3276412-3276798 bp Feature: domain Description: PHA02517 Location: 3276415-3276796 bp Feature: domain Description: PHA0251 7 Location: 327641 5-3276796 bp Feature: gene Location: 3276975-3278321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3277071-3277803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3277071 -3277803 bp Feature: domain Description: GIIM Note: maturase Location: 3277878-3278076 bp Feature: domain Description: GIIM Note: maturase Location: 3277878-3278076 bp Feature: gene Location: 3278451-3278876 bp Feature: gene Location: 3279089-3279568 bp Feature: domain Description: PHA02517 Location: 3279149-3279503 bp Feature: domain Description: PHA0251 7 Location: 32791 49-3279503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, group_II_RT_mat (TIGR04416), GIIM (pfam08388), Inovirus_Gp2 (pfam11726), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: CP030916.1 Shigella flexneri 2a strain 1508 plasmid pSF150801 (222126 bp)
Overview 1 RT 1: 26534-29235 bp 2 RT 2: 123531-126184 bp Neighborhood of RT #1 [26534, 29255] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Neighborhood of RT #2 [123531, 126184] COG3547 RVT-GII GIIM Feature: gene Location: 26534-26689 bp Feature: gene Location: 26715-27086 bp Feature: domain Description: GIIM Note: maturase Location: 26793-27012 bp Feature: domain Description: GIIM Note: maturase Location: 2 6793-2 7012 bp Feature: gene Location: 27094-27897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27394-27889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7394-2 7889 bp Feature: gene Location: 27910-28110 bp Feature: domain Description: Tra5 Location: 27919-28093 bp Feature: domain Description: Tra5 Location: 2 7919-2 8093 bp Feature: gene Location: 28506-29255 bp Feature: domain Description: PAP2_acid_phosphatase Location: 28581-29235 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 8581-2 92 35 bp Feature: gene Location: 123531-124016 bp Feature: domain Description: COG3547 Location: 123549-124002 bp Feature: domain Description: COG3547 Location: 12 3549-12 4002 bp Feature: gene Location: 124112-124279 bp Feature: gene Location: 124305-125522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124491-125145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 4491-12 5145 bp Feature: domain Description: GIIM Note: maturase Location: 125223-125445 bp Feature: domain Description: GIIM Note: maturase Location: 12 52 2 3-12 5445 bp Feature: gene Location: 125533-125916 bp Feature: gene Location: 125990-126184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397), COG3547 (Transposase )