myRT

myRT report for GCA_003324895.1_ASM332489v1

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Seq: CP030026.1 Salmonella enterica subsp. diarizonae serovar 59:z10:- strain SA20051472 chromosome (6125373 bp)
Overview 1 RT 1: 2486473-2491510 bp 2 RT 2: 3036870-3041312 bp 3 RT 3: 3591809-3597018 bp 4 RT 4: 5452347-5460357 bp Neighborhood of RT #1 [2486473, 2491510] PRK09692 RVT-UG28 RVT-UG28 Neighborhood of RT #2 [3036870, 3041312] DDE_Tnp_1_5 RVT_N RVT-GII GIIM Neighborhood of RT #3 [3591809, 3597032] RVT-UG4 PRK15223 FimC Neighborhood of RT #4 [5452347, 5460357] GanA Transposase_mut Transposase_20 RVT-GII GIIM Phage_int_SAM_4 INT_RitA_C_like INT_RitC_C_like RVT_N RVT-GII Feature: gene Location: 2486473-2487693 bp Feature: domain Description: PRK09692 Location: 2486485-2487682 bp Feature: domain Description: PRK09692 Location: 2486485-2487682 bp Feature: gene Location: 2487744-2487929 bp Feature: gene Location: 2488053-2488544 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 2488341-2488542 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 2488341 -2488542 bp Feature: gene Location: 2488661-2489551 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 2488667-2488976 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 2488667-2488976 bp Feature: gene Location: 2490541-2490798 bp Feature: gene Location: 2491271-2491510 bp Feature: gene Location: 3036870-3037217 bp Feature: gene Location: 3037758-3038681 bp Feature: domain Description: DDE_Tnp_1_5 Location: 3037818-3038148 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 303781 8-30381 48 bp Feature: gene Location: 3039117-3040571 bp Feature: domain Description: RVT_N Location: 3039171-3039408 bp Feature: domain Description: RVT_N Location: 30391 71 -3039408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3039459-3040080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3039459-3040080 bp Feature: domain Description: GIIM Note: maturase Location: 3040131-3040365 bp Feature: domain Description: GIIM Note: maturase Location: 30401 31 -3040365 bp Feature: gene Location: 3040645-3040971 bp Feature: gene Location: 3041160-3041312 bp Feature: gene Location: 3591809-3592030 bp Feature: gene Location: 3592087-3592563 bp Feature: gene Location: 3592609-3593586 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3592966-3593413 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3592966-359341 3 bp Feature: gene Location: 3593604-3596114 bp Feature: domain Description: PRK15223 Location: 3593607-3596112 bp Feature: domain Description: PRK1 5223 Location: 3593607-35961 1 2 bp Feature: gene Location: 3596241-3597032 bp Feature: domain Description: FimC Location: 3596325-3597018 bp Feature: domain Description: FimC Location: 3596325-359701 8 bp Feature: gene Location: 5452347-5454395 bp Feature: domain Description: GanA Location: 5452380-5454390 bp Feature: domain Description: GanA Location: 5452380-5454390 bp Feature: gene Location: 5454544-5455080 bp Feature: domain Description: Transposase_mut Location: 5454583-5454757 bp Feature: domain Description: Transposase_mut Location: 5454583-5454757 bp Feature: domain Description: Transposase_20 Location: 5454763-5454949 bp Feature: domain Description: Transposase_20 Location: 5454763-5454949 bp Feature: gene Location: 5455213-5455950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5455243-5455429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5455243-5455429 bp Feature: domain Description: GIIM Note: maturase Location: 5455483-5455717 bp Feature: domain Description: GIIM Note: maturase Location: 5455483-545571 7 bp Feature: gene Location: 5456005-5456136 bp Feature: gene Location: 5456139-5457041 bp Feature: domain Description: Phage_int_SAM_4 Location: 5456481-5456700 bp Feature: domain Description: Phage_int_SAM_4 Location: 5456481 -5456700 bp Feature: domain Description: INT_RitA_C_like Location: 5456712-5457006 bp Feature: domain Description: INT_RitA_C_like Location: 545671 2-5457006 bp Feature: gene Location: 5458029-5458418 bp Feature: gene Location: 5458408-5458965 bp Feature: domain Description: INT_RitC_C_like Location: 5458411-5458885 bp Feature: domain Description: INT_RitC_C_like Location: 545841 1 -5458885 bp Feature: gene Location: 5459015-5459686 bp Feature: domain Description: RVT_N Location: 5459018-5459210 bp Feature: domain Description: RVT_N Location: 545901 8-545921 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5459255-5459630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5459255-5459630 bp Feature: gene Location: 5459776-5460063 bp Feature: gene Location: 5460112-5460357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG28, DDE_Tnp_1_5 (pfam13737), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RVT-UG4, PRK15223 (fimbrial biogenesis outer membrane usher protein), FimC (COG3121), GanA (COG1874)
Transposase_mut (pfam00872), Transposase_20 (pfam02371), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), INT_RitC_C_like (cd01182)

Seq: CP030027.1 Salmonella enterica subsp. diarizonae serovar 59:z10:- strain SA20051472 plasmid pSA20051472.1, complete sequence (169096 bp)
Overview 1 RT 1: 91558-95231 bp Neighborhood of RT #1 [91558, 95242] PRK15263 PRK15263 RVT-UG4 IS285 Feature: gene Location: 91558-92208 bp Feature: domain Description: PRK15263 Location: 91666-91831 bp Feature: domain Description: PRK152 63 Location: 91666-91831 bp Feature: domain Description: PRK15263 Location: 92086-92206 bp Feature: domain Description: PRK152 63 Location: 92 086-92 2 06 bp Feature: gene Location: 92271-92873 bp Feature: gene Location: 92917-93276 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 92920-93070 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 92 92 0-93070 bp Feature: gene Location: 93341-93826 bp Feature: gene Location: 94160-95242 bp Feature: domain Description: IS285 Location: 94163-95231 bp Feature: domain Description: IS2 85 Location: 94163-952 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15263 (fimbrial-like protein), RVT-UG4, IS285 (COG3328)