myRT

myRT report for GCA_003325625.1_ASM332562v1

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Seq: QORA01000025.1 Pseudomonas aeruginosa strain F2-1206 1206115_S36_R2_001_contig_17, whole genome shotgun sequence (76577 bp)
Overview 1 RT 1: 49911-56804 bp Neighborhood of RT #1 [49911, 56818] PBP2_HisK RVT-UG15 DEAH_box_HrpB IV_pilus_PilQ Feature: gene Location: 49911-50645 bp Feature: domain Description: PBP2_HisK Location: 50013-50625 bp Feature: domain Description: PBP2_HisK Location: 5001 3-50625 bp Feature: gene Location: 50669-51076 bp Feature: gene Location: 51955-53256 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 52060-52474 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 52060-52474 bp Feature: gene Location: 53367-55889 bp Feature: domain Description: DEAH_box_HrpB Location: 53379-55884 bp Feature: domain Description: DEAH_box_HrpB Location: 53379-55884 bp Feature: gene Location: 56204-56818 bp Feature: domain Description: IV_pilus_PilQ Location: 56594-56804 bp Feature: domain Description: IV_pilus_PilQ Location: 56594-56804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_HisK (cd13704), RVT-UG15, DEAH_box_HrpB (TIGR01970), IV_pilus_PilQ (TIGR02515)

Seq: QORA01000264.1 Pseudomonas aeruginosa strain F2-1206 1206115_S36_R2_001_contig_33, whole genome shotgun sequence (125308 bp)
Overview 1 RT 1: 49349-59655 bp Neighborhood of RT #1 [49349, 59657] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 49349-50470 bp Feature: domain Description: COG3177 Location: 49367-50459 bp Feature: domain Description: COG3177 Location: 49367-50459 bp Feature: gene Location: 50729-50866 bp Feature: gene Location: 51194-52879 bp Feature: domain Description: RVT_N Location: 51251-51491 bp Feature: domain Description: RVT_N Location: 512 51-51491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51539-52175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51539-52 175 bp Feature: domain Description: GIIM Note: maturase Location: 52229-52460 bp Feature: domain Description: GIIM Note: maturase Location: 52 2 2 9-52 460 bp Feature: domain Description: HNH Note: nucleases Location: 52712-52850 bp Feature: domain Description: HNH Note: nucleases Location: 52 712 -52 850 bp Feature: gene Location: 53960-57697 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 54068-54725 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 54068-5472 5 bp Feature: domain Description: PRK09776 Location: 54938-55409 bp Feature: domain Description: PRK09776 Location: 54938-55409 bp Feature: domain Description: PAS Location: 55499-55991 bp Feature: domain Description: PAS Location: 55499-55991 bp Feature: domain Description: PRK10060 Location: 56000-57647 bp Feature: domain Description: PRK10060 Location: 56000-57647 bp Feature: gene Location: 57804-59657 bp Feature: domain Description: PRK05658 Location: 57816-59655 bp Feature: domain Description: PRK05658 Location: 57816-59655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)