myRT

myRT report for GCA_003326035.1_ASM332603v1

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Seq: QDHA01000103.1 Cupriavidus necator strain CR12 D70275-12_R1_contig_103, whole genome shotgun sequence (27326 bp)
Overview 1 RT 1: 436-4092 bp Neighborhood of RT #1 [436, 4109] RVT-GII GIIM PRK10636 Feature: gene Location: 436-1701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 685-1348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 685-1 348 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1633 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 7-1 633 bp Feature: gene Location: 2266-2403 bp Feature: gene Location: 2430-4109 bp Feature: domain Description: PRK10636 Location: 2433-4092 bp Feature: domain Description: PRK1 0636 Location: 2433-4092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10636 (putative ABC transporter ATP-binding protein; Provisional), RVT-GII, GIIM (pfam08388)

Seq: QDHA01000161.1 Cupriavidus necator strain CR12 D70275-12_R1_contig_161, whole genome shotgun sequence (3810 bp)
Overview 1 RT 1: 3-3808 bp Neighborhood of RT #1 [3, 3808] RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 3-353 bp Feature: gene Location: 355-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640-1276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640-12 76 bp Feature: domain Description: GIIM Note: maturase Location: 1351-1579 bp Feature: domain Description: GIIM Note: maturase Location: 1351-1579 bp Feature: gene Location: 2244-3566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2547-3186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 547-3186 bp Feature: domain Description: GIIM Note: maturase Location: 3261-3480 bp Feature: domain Description: GIIM Note: maturase Location: 32 61-3480 bp Feature: gene Location: 3563-3808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QDHA01000025.1 Cupriavidus necator strain CR12 D70275-12_R1_contig_25, whole genome shotgun sequence (37824 bp)
Overview 1 RT 1: 35570-37737 bp Neighborhood of RT #1 [35570, 37823] DDE_3 RVT-GII GIIM Feature: gene Location: 35570-35869 bp Feature: gene Location: 35882-36298 bp Feature: domain Description: DDE_3 Location: 35885-36200 bp Feature: domain Description: DDE_3 Location: 3 5885-3 6200 bp Feature: gene Location: 36507-37823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36804-37443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6804-3 7443 bp Feature: domain Description: GIIM Note: maturase Location: 37518-37737 bp Feature: domain Description: GIIM Note: maturase Location: 3 7518-3 773 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388)

Seq: QDHA01000031.1 Cupriavidus necator strain CR12 D70275-12_R1_contig_31, whole genome shotgun sequence (93710 bp)
Overview 1 RT 1: 33827-43105 bp Neighborhood of RT #1 [33827, 43125] GT4_PimA-like dnaE RVT-GII GIIM HNHc PRK05320 CoAse Feature: gene Location: 33827-34900 bp Feature: domain Description: GT4_PimA-like Location: 33833-34778 bp Feature: domain Description: GT4 _PimA-like Location: 33833-34 778 bp Feature: gene Location: 34920-38432 bp Feature: domain Description: dnaE Location: 34935-38394 bp Feature: domain Description: dnaE Location: 34 935-38394 bp Feature: gene Location: 40122-41420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40125-40713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 0125-4 0713 bp Feature: domain Description: GIIM Note: maturase Location: 40767-40998 bp Feature: domain Description: GIIM Note: maturase Location: 4 0767-4 0998 bp Feature: domain Description: HNHc Note: nucleases Location: 41220-41382 bp Feature: domain Description: HNHc Note: nucleases Location: 4 1220-4 1382 bp Feature: gene Location: 41566-42432 bp Feature: domain Description: PRK05320 Location: 41587-42355 bp Feature: domain Description: PRK05320 Location: 4 1587-4 2355 bp Feature: gene Location: 42445-43125 bp Feature: domain Description: CoAse Location: 42625-43105 bp Feature: domain Description: CoAse Location: 4 2625-4 3105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT4_PimA-like (cd03801), dnaE (PRK07374), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05320 (rhodanese superfamily protein; Provisional), CoAse (cd03426)

Seq: QDHA01000061.1 Cupriavidus necator strain CR12 D70275-12_R1_contig_61, whole genome shotgun sequence (26136 bp)
Overview 1 RT 1: 2-3687 bp Neighborhood of RT #1 [2, 3710] RVT-GII GIIM GlxA DltE Feature: gene Location: 2-1318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-938 bp Feature: domain Description: GIIM Note: maturase Location: 1013-1232 bp Feature: domain Description: GIIM Note: maturase Location: 1013-1232 bp Feature: gene Location: 1842-2789 bp Feature: domain Description: GlxA Location: 1851-2778 bp Feature: domain Description: GlxA Location: 185 1-2778 bp Feature: gene Location: 2910-3710 bp Feature: domain Description: DltE Location: 2919-3687 bp Feature: domain Description: DltE Location: 2919-3687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlxA (COG4977), RVT-GII, GIIM (pfam08388), DltE (COG3967)

Seq: QDHA01000082.1 Cupriavidus necator strain CR12 D70275-12_R1_contig_82, whole genome shotgun sequence (2782 bp)
Overview 1 RT 1: 47-2777 bp Neighborhood of RT #1 [47, 2777] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 47-265 bp Feature: gene Location: 299-2143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 566-1370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56 6 -1370 bp Feature: domain Description: Intron_maturas2 Location: 1475-1769 bp Feature: domain Description: Intron_maturas2 Location: 1475-176 9 bp Feature: domain Description: HNHc Note: nucleases Location: 1934-2081 bp Feature: domain Description: HNHc Note: nucleases Location: 1934-2081 bp Feature: gene Location: 2130-2549 bp Feature: gene Location: 2649-2777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)