myRT

myRT report for GCA_003326205.1_ASM332620v1

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Seq: LWTK01000033.1 Nostoc sp. ATCC 43529 scaffold17.1, whole genome shotgun sequence (222114 bp)
Overview 1 RT 1: 194653-198809 bp Neighborhood of RT #1 [194653, 198809] Uma2 RVT_N RVT-GII GIIM HNHc tmk Feature: gene Location: 194653-195213 bp Feature: domain Description: Uma2 Location: 194659-195205 bp Feature: domain Description: Uma2 Location: 1 94659-1 95205 bp Feature: gene Location: 195758-196051 bp Feature: gene Location: 196065-197825 bp Feature: RT Description: RVT_N Location: 196101-196344 bp Feature: RT Description: RVT_N Location: 1 961 01 -1 96344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196461-197130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 96461 -1 971 30 bp Feature: domain Description: GIIM Note: maturase Location: 197214-197442 bp Feature: domain Description: GIIM Note: maturase Location: 1 9721 4-1 97442 bp Feature: domain Description: HNHc Note: nucleases Location: 197637-197796 bp Feature: domain Description: HNHc Note: nucleases Location: 1 97637-1 97796 bp Feature: gene Location: 197878-198507 bp Feature: domain Description: tmk Location: 197923-198493 bp Feature: domain Description: tmk Location: 1 97923-1 98493 bp Feature: gene Location: 198507-198809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), tmk (PRK00698)

Seq: LWTK01000036.1 Nostoc sp. ATCC 43529 scaffold2.1, whole genome shotgun sequence (776964 bp)
Overview 1 RT 1: 695066-700365 bp Neighborhood of RT #1 [695066, 700365] SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 RVT-Retrons Feature: gene Location: 695066-696604 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 695099-695249 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 695099-6952 49 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 695498-695606 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 695498-695606 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 695918-696557 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 695918-696557 bp Feature: gene Location: 696872-697099 bp Feature: gene Location: 697452-698525 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 697671-698280 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 697671-6982 80 bp Feature: gene Location: 699494-700072 bp Feature: gene Location: 700018-700365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SPFH_eoslipins_u2 (cd13438), RVT-Retrons

Seq: LWTK01000044.1 Nostoc sp. ATCC 43529 scaffold28.1, whole genome shotgun sequence (143419 bp)
Overview 1 RT 1: 41589-47246 bp Neighborhood of RT #1 [41589, 47593] COG5635 RVT_N RVT-GII GIIM HNHc COG2343 PCBER_SDR_a Feature: gene Location: 41589-42029 bp Feature: gene Location: 42596-43912 bp Feature: domain Description: COG5635 Location: 42605-43214 bp Feature: domain Description: COG563 5 Location: 42605-43 214 bp Feature: gene Location: 44180-46063 bp Feature: RT Description: RVT_N Location: 44318-44564 bp Feature: RT Description: RVT_N Location: 443 18-44564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44606-45302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44606-453 02 bp Feature: domain Description: GIIM Note: maturase Location: 45401-45635 bp Feature: domain Description: GIIM Note: maturase Location: 45401-4563 5 bp Feature: domain Description: HNHc Note: nucleases Location: 45842-45998 bp Feature: domain Description: HNHc Note: nucleases Location: 45842-45998 bp Feature: gene Location: 46659-46940 bp Feature: domain Description: COG2343 Location: 46665-46929 bp Feature: domain Description: COG23 43 Location: 46665-46929 bp Feature: gene Location: 47009-47593 bp Feature: domain Description: PCBER_SDR_a Location: 47015-47246 bp Feature: domain Description: PCBER_SDR_a Location: 47015-47246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5635 (Predicted NTPase, NACHT family domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG2343 (Uncharacterized conserved protein, DUF427 family ), PCBER_SDR_a (cd05259)

Seq: LWTK01000071.1 Nostoc sp. ATCC 43529 scaffold56.1, whole genome shotgun sequence (28389 bp)
Overview 1 RT 1: 17324-21106 bp Neighborhood of RT #1 [17324, 21106] RVT_N RVT-GII GIIM HNH PRK03963 Feature: gene Location: 17324-17500 bp Feature: gene Location: 17638-17940 bp Feature: gene Location: 18138-19913 bp Feature: RT Description: RVT_N Location: 18177-18423 bp Feature: RT Description: RVT_N Location: 18177-184 23 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18465-19137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184 65-19137 bp Feature: domain Description: GIIM Note: maturase Location: 19221-19449 bp Feature: domain Description: GIIM Note: maturase Location: 19221-194 4 9 bp Feature: domain Description: HNH Note: nucleases Location: 19674-19806 bp Feature: domain Description: HNH Note: nucleases Location: 19674 -19806 bp Feature: gene Location: 20501-20950 bp Feature: domain Description: PRK03963 Location: 20525-20714 bp Feature: domain Description: PRK03963 Location: 20525-20714 bp Feature: gene Location: 20954-21106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK03963 (V-type ATP synthase subunit E; Provisional)

Seq: LWTK01000105.1 Nostoc sp. ATCC 43529 scaffold9.1, whole genome shotgun sequence (338360 bp)
Overview 1 RT 1: 247437-252322 bp Neighborhood of RT #1 [247437, 252600] MATE_DinF_like RVT_N RVT-GII YflT pdsO YflT YflT Uma2 Feature: gene Location: 247437-247688 bp Feature: gene Location: 247866-249251 bp Feature: domain Description: MATE_DinF_like Location: 247908-249171 bp Feature: domain Description: MATE_DinF_like Location: 247908-249171 bp Feature: gene Location: 250015-250443 bp Feature: RT Description: RVT_N Location: 250021-250195 bp Feature: RT Description: RVT_N Location: 25 0021-25 0195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250258-250441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 025 8-25 0441 bp Feature: gene Location: 250558-251508 bp Feature: domain Description: YflT Location: 250588-250717 bp Feature: domain Description: YflT Location: 25 05 88-25 0717 bp Feature: domain Description: pdsO Location: 250741-250801 bp Feature: domain Description: pdsO Location: 25 0741-25 0801 bp Feature: domain Description: YflT Location: 250924-251002 bp Feature: domain Description: YflT Location: 25 0924-25 1002 bp Feature: domain Description: YflT Location: 251338-251401 bp Feature: domain Description: YflT Location: 25 1338-25 1401 bp Feature: gene Location: 251785-252600 bp Feature: domain Description: Uma2 Location: 252010-252322 bp Feature: domain Description: Uma2 Location: 25 2010-25 2322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_DinF_like (cd13136), RVT_N (pfam13655), RVT-GII, YflT (pfam11181), pdsO (TIGR03789), Uma2 (pfam05685)