myRT

myRT report for GCA_003326215.1_ASM332621v1

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Seq: LXQD01000032.1 Nostoc minutum NIES-26 scaffold128.1, whole genome shotgun sequence (16933 bp)
Overview 1 RT 1: 13726-16915 bp Neighborhood of RT #1 [13726, 16932] CypX nucleoid_noc RVT-GII GIIM McrA KOG4768 Feature: gene Location: 13726-15114 bp Feature: domain Description: CypX Location: 13738-15043 bp Feature: domain Description: CypX Location: 1 3738-1 5043 bp Feature: gene Location: 15156-15371 bp Feature: domain Description: nucleoid_noc Location: 15162-15288 bp Feature: domain Description: nucleoid_noc Location: 1 51 62-1 5288 bp Feature: gene Location: 15428-16546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15461-15800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5461 -1 5800 bp Feature: domain Description: GIIM Note: maturase Location: 15902-16133 bp Feature: domain Description: GIIM Note: maturase Location: 1 5902-1 61 33 bp Feature: domain Description: McrA Location: 16172-16493 bp Feature: domain Description: McrA Location: 1 61 72-1 6493 bp Feature: gene Location: 16747-16932 bp Feature: domain Description: KOG4768 Location: 16756-16915 bp Feature: domain Description: KOG4768 Location: 1 6756-1 691 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CypX (COG2124), nucleoid_noc (TIGR04285), RVT-GII, GIIM (pfam08388), McrA (COG4058), KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: LXQD01000133.1 Nostoc minutum NIES-26 scaffold221.1, whole genome shotgun sequence (2434 bp)
Overview 1 RT 1: 89-2284 bp Neighborhood of RT #1 [89, 2340] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 89-343 bp Feature: gene Location: 541-2340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 802-1597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 802 -1597 bp Feature: domain Description: Intron_maturas2 Location: 1693-1936 bp Feature: domain Description: Intron_maturas2 Location: 1693-1936 bp Feature: domain Description: HNHc Note: nucleases Location: 2095-2284 bp Feature: domain Description: HNHc Note: nucleases Location: 2 095-2 2 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LXQD01000135.1 Nostoc minutum NIES-26 scaffold223.1, whole genome shotgun sequence (2406 bp)
Overview 1 RT 1: 2-2250 bp Neighborhood of RT #1 [2, 2294] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-181 bp Feature: gene Location: 510-2294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1566 bp Feature: domain Description: Intron_maturas2 Location: 1668-1905 bp Feature: domain Description: Intron_maturas2 Location: 1668-1905 bp Feature: domain Description: HNHc Note: nucleases Location: 2073-2250 bp Feature: domain Description: HNHc Note: nucleases Location: 2073 -2250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LXQD01000138.1 Nostoc minutum NIES-26 scaffold226.1, whole genome shotgun sequence (2351 bp)
Overview 1 RT 1: 545-2350 bp Neighborhood of RT #1 [545, 2350] RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 545-2059 bp Feature: domain Description: RVT_N Location: 581-827 bp Feature: domain Description: RVT_N Location: 581-827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-1307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-1307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1310-1475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1310-14 75 bp Feature: domain Description: McrA Location: 1709-2039 bp Feature: domain Description: McrA Location: 1709-2039 bp Feature: gene Location: 2141-2350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: LXQD01000156.1 Nostoc minutum NIES-26 scaffold242.1, whole genome shotgun sequence (1870 bp)
Overview 1 RT 1: 1-1862 bp Neighborhood of RT #1 [1, 1867] RVT_N RVT-GII PRK12275 Feature: gene Location: 1-237 bp Feature: gene Location: 282-1013 bp Feature: domain Description: RVT_N Location: 477-723 bp Feature: domain Description: RVT_N Location: 477-723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765 -999 bp Feature: gene Location: 1661-1867 bp Feature: domain Description: PRK12275 Location: 1664-1862 bp Feature: domain Description: PRK12275 Location: 1664-1862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK12275 (hypothetical protein; Reviewed)

Seq: LXQD01000215.1 Nostoc minutum NIES-26 scaffold30.1, whole genome shotgun sequence (112084 bp)
Overview 1 RT 1: 24887-30930 bp Neighborhood of RT #1 [24887, 31007] PrtC DUF3656 PrtC RVT-UG13 HicB Uma2 Feature: gene Location: 24887-27439 bp Feature: domain Description: PrtC Location: 24923-25961 bp Feature: domain Description: PrtC Location: 24923-2596 1 bp Feature: domain Description: DUF3656 Location: 26138-26495 bp Feature: domain Description: DUF36 56 Location: 26 138-26 495 bp Feature: domain Description: PrtC Location: 26876-27359 bp Feature: domain Description: PrtC Location: 26 876 -27359 bp Feature: gene Location: 27654-27791 bp Feature: gene Location: 28017-29822 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 28440-28905 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 28440-28905 bp Feature: gene Location: 30112-30342 bp Feature: domain Description: HicB Location: 30121-30325 bp Feature: domain Description: HicB Location: 30121-30325 bp Feature: gene Location: 30390-31007 bp Feature: domain Description: Uma2 Location: 30426-30930 bp Feature: domain Description: Uma2 Location: 30426 -30930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrtC (COG0826), DUF3656 (pfam12392), RVT-UG13, HicB (pfam05534), Uma2 (pfam05685)

Seq: LXQD01000309.1 Nostoc minutum NIES-26 scaffold52.1, whole genome shotgun sequence (60363 bp)
Overview 1 RT 1: 2-3511 bp 2 RT 2: 56943-60360 bp Neighborhood of RT #1 [2, 3546] KOG4768 RVT-GII GIIM HNHc AAA_35 Neighborhood of RT #2 [56943, 60360] PRK14948 RVT_N RVT-GII Feature: gene Location: 2-187 bp Feature: domain Description: KOG4768 Location: 11-170 bp Feature: domain Description: KOG47 68 Location: 11-17 0 bp Feature: gene Location: 406-1464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-7 48 bp Feature: domain Description: GIIM Note: maturase Location: 850-1081 bp Feature: domain Description: GIIM Note: maturase Location: 850-1081 bp Feature: domain Description: HNHc Note: nucleases Location: 1267-1408 bp Feature: domain Description: HNHc Note: nucleases Location: 1267 -1408 bp Feature: gene Location: 1473-1631 bp Feature: gene Location: 2191-3546 bp Feature: domain Description: AAA_35 Location: 2524-3511 bp Feature: domain Description: AAA_35 Location: 2524-3511 bp Feature: gene Location: 56943-57830 bp Feature: domain Description: PRK14948 Location: 57069-57408 bp Feature: domain Description: PRK14948 Location: 57 069-57 408 bp Feature: gene Location: 58545-58835 bp Feature: gene Location: 59516-60082 bp Feature: domain Description: RVT_N Location: 59549-59795 bp Feature: domain Description: RVT_N Location: 59549-597 95 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59837-60068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59837 -60068 bp Feature: gene Location: 60127-60360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AAA_35 (pfam14516), PRK14948 (DNA polymerase III subunit gamma/tau), RVT_N (pfam13655)

Seq: LXQD01000348.1 Nostoc minutum NIES-26 scaffold88.1, whole genome shotgun sequence (29543 bp)
Overview 1 RT 1: 15986-19573 bp Neighborhood of RT #1 [15986, 19677] YfmG Avd_like RVT-DGRs Pat_hypo_Ecoli_Z1214_like Feature: gene Location: 15986-16837 bp Feature: domain Description: YfmG Location: 16016-16823 bp Feature: domain Description: YfmG Location: 16016-168 23 bp Feature: gene Location: 16965-17309 bp Feature: domain Description: Avd_like Location: 16983-17289 bp Feature: domain Description: Avd_like Location: 1698 3-1728 9 bp Feature: gene Location: 17312-18370 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17522-18161 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17522-18 161 bp Feature: gene Location: 18714-18899 bp Feature: gene Location: 19009-19677 bp Feature: domain Description: Pat_hypo_Ecoli_Z1214_like Location: 19042-19573 bp Feature: domain Description: Pat_hypo_Ecoli_Z1214_like Location: 19042-19573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, Pat_hypo_Ecoli_Z1214_like (cd07209)