myRT

myRT report for GCA_003326245.1_ASM332624v1

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Seq: LWSY01000084.1 Nostoc sp. ATCC 53789 scaffold175.1, whole genome shotgun sequence (1316 bp)
Overview 1 RT 1: 1-1281 bp Neighborhood of RT #1 [1, 1313] YkfC RVT-GII GIIM Feature: gene Location: 1-417 bp Feature: domain Description: YkfC Location: 100-391 bp Feature: domain Description: YkfC Location: 1 00-391 bp Feature: gene Location: 693-1313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 717-1023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 7-1 023 bp Feature: domain Description: GIIM Note: maturase Location: 1080-1281 bp Feature: domain Description: GIIM Note: maturase Location: 1 080-1 281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388)

Seq: LWSY01000110.1 Nostoc sp. ATCC 53789 scaffold2.1, whole genome shotgun sequence (286331 bp)
Overview 1 RT 1: 213994-219361 bp Neighborhood of RT #1 [213994, 219369] cysS YejR RVT-GII TM_helix TM_helix TM_helix TM_helix TM_helix Polyketide_cyc2 Feature: gene Location: 213994-215517 bp Feature: domain Description: cysS Location: 214066-215512 bp Feature: domain Description: cysS Location: 2 14066-2 15512 bp Feature: gene Location: 215586-216701 bp Feature: domain Description: YejR Location: 215643-216660 bp Feature: domain Description: YejR Location: 2 15643-2 16660 bp Feature: gene Location: 216807-217022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216888-217011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 16888-2 17011 bp Feature: gene Location: 217081-218733 bp Feature: domain Description: TM_helix Location: 217213-217351 bp Feature: domain Description: TM_helix Location: 2 172 13-2 17351 bp Feature: domain Description: TM_helix Location: 217492-217633 bp Feature: domain Description: TM_helix Location: 2 17492 -2 17633 bp Feature: domain Description: TM_helix Location: 217780-217921 bp Feature: domain Description: TM_helix Location: 2 17780-2 1792 1 bp Feature: domain Description: TM_helix Location: 218068-218209 bp Feature: domain Description: TM_helix Location: 2 18068-2 182 09 bp Feature: domain Description: TM_helix Location: 218386-218494 bp Feature: domain Description: TM_helix Location: 2 18386-2 18494 bp Feature: gene Location: 218929-219369 bp Feature: domain Description: Polyketide_cyc2 Location: 218944-219361 bp Feature: domain Description: Polyketide_cyc2 Location: 2 18944-2 19361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cysS (TIGR00435), YejR (COG0523), RVT-GII, TM_helix (pfam05552), Polyketide_cyc2 (pfam10604)

Seq: LWSY01000122.1 Nostoc sp. ATCC 53789 scaffold21.1, whole genome shotgun sequence (116438 bp)
Overview 1 RT 1: 51463-54842 bp Neighborhood of RT #1 [51463, 54862] RVT_N RVT-GII GIIM McrA HTH_XRE Feature: gene Location: 51463-51909 bp Feature: gene Location: 51931-52257 bp Feature: gene Location: 52304-53845 bp Feature: RT Description: RVT_N Location: 52340-52580 bp Feature: RT Description: RVT_N Location: 523 40-52580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52637-53264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5263 7-53 264 bp Feature: domain Description: GIIM Note: maturase Location: 53321-53510 bp Feature: domain Description: GIIM Note: maturase Location: 53 3 21-53 510 bp Feature: domain Description: McrA Location: 53513-53819 bp Feature: domain Description: McrA Location: 53 513 -53 819 bp Feature: gene Location: 53894-54130 bp Feature: gene Location: 54608-54862 bp Feature: domain Description: HTH_XRE Location: 54680-54842 bp Feature: domain Description: HTH_XRE Location: 54680-54842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), HTH_XRE (smart00530)

Seq: LWSY01000144.1 Nostoc sp. ATCC 53789 scaffold3.1, whole genome shotgun sequence (272676 bp)
Overview 1 RT 1: 23096-28873 bp Neighborhood of RT #1 [23096, 28873] pgi Nif11 Nif11 RVT-Retrons AlbA_2 TPR TPR Feature: gene Location: 23096-24682 bp Feature: domain Description: pgi Location: 23099-24674 bp Feature: domain Description: pgi Location: 23099-24 674 bp Feature: gene Location: 24940-25602 bp Feature: domain Description: Nif11 Location: 25042-25174 bp Feature: domain Description: Nif11 Location: 2504 2-25174 bp Feature: domain Description: Nif11 Location: 25216-25330 bp Feature: domain Description: Nif11 Location: 25216-25330 bp Feature: gene Location: 26031-27125 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26211-26814 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26211-26814 bp Feature: gene Location: 27479-28546 bp Feature: domain Description: AlbA_2 Location: 27530-27956 bp Feature: domain Description: AlbA_2 Location: 27530-27956 bp Feature: domain Description: TPR Location: 27998-28250 bp Feature: domain Description: TPR Location: 27998-28250 bp Feature: domain Description: TPR Location: 28274-28511 bp Feature: domain Description: TPR Location: 28274 -28511 bp Feature: gene Location: 28619-28873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pgi (PRK14097), Nif11 (pfam07862), RVT-Retrons, AlbA_2 (pfam04326), TPR (smart00028)

Seq: LWSY01000155.1 Nostoc sp. ATCC 53789 scaffold4.1, whole genome shotgun sequence (229036 bp)
Overview 1 RT 1: 157919-163824 bp Neighborhood of RT #1 [157919, 163868] TraX RVT-Retrons SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 Feature: gene Location: 157919-158584 bp Feature: domain Description: TraX Location: 157934-158549 bp Feature: domain Description: TraX Location: 15 7934-15 85 49 bp Feature: gene Location: 158751-159329 bp Feature: gene Location: 160322-161416 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 160556-161165 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1605 5 6-161165 bp Feature: gene Location: 161770-161907 bp Feature: gene Location: 162333-163868 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 162366-162516 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 162366-1625 16 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 162765-162873 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 162765 -162873 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 163185-163824 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 163185 -163824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraX (pfam05857), RVT-Retrons, SPFH_eoslipins_u2 (cd13438)

Seq: LWSY01000182.1 Nostoc sp. ATCC 53789 scaffold64.1, whole genome shotgun sequence (43465 bp)
Overview 1 RT 1: 29669-36286 bp Neighborhood of RT #1 [29669, 37191] GAF MCP_signal CheA CheA RVT-GII GIIM McrA PinE Zn_ribbon_recom Feature: gene Location: 29669-30916 bp Feature: domain Description: GAF Location: 29963-30377 bp Feature: domain Description: GAF Location: 2996 3-30377 bp Feature: domain Description: MCP_signal Location: 30446-30902 bp Feature: domain Description: MCP_signal Location: 30446 -30902 bp Feature: gene Location: 31086-33311 bp Feature: domain Description: CheA Location: 31125-31590 bp Feature: domain Description: CheA Location: 31125-31590 bp Feature: domain Description: CheA Location: 31944-33303 bp Feature: domain Description: CheA Location: 31944-33303 bp Feature: gene Location: 33749-34768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33755-34184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33755-34184 bp Feature: domain Description: GIIM Note: maturase Location: 34241-34439 bp Feature: domain Description: GIIM Note: maturase Location: 34241-34439 bp Feature: domain Description: McrA Location: 34448-34748 bp Feature: domain Description: McrA Location: 34448-34748 bp Feature: gene Location: 34819-35103 bp Feature: gene Location: 35143-37191 bp Feature: domain Description: PinE Location: 35185-35869 bp Feature: domain Description: PinE Location: 35185-3586 9 bp Feature: domain Description: Zn_ribbon_recom Location: 36127-36286 bp Feature: domain Description: Zn_ribbon_recom Location: 36 127-36 286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GAF (smart00065), MCP_signal (cl39097), CheA (COG0643), RVT-GII, GIIM (pfam08388), McrA (COG4058), PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: LWSY01000210.1 Nostoc sp. ATCC 53789 scaffold9.1, whole genome shotgun sequence (193707 bp)
Overview 1 RT 1: 65329-69832 bp Neighborhood of RT #1 [65329, 69843] OmpR RVT-Retrons SRPBCC_4 Usp Feature: gene Location: 65329-66009 bp Feature: domain Description: OmpR Location: 65332-65998 bp Feature: domain Description: OmpR Location: 65332-65998 bp Feature: gene Location: 66117-66536 bp Feature: gene Location: 66644-68419 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66809-67409 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66809-67 409 bp Feature: gene Location: 68634-69116 bp Feature: domain Description: SRPBCC_4 Location: 68643-69078 bp Feature: domain Description: SRPBCC_4 Location: 68643-6907 8 bp Feature: gene Location: 69418-69843 bp Feature: domain Description: Usp Location: 69427-69832 bp Feature: domain Description: Usp Location: 69427 -69832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), RVT-Retrons, SRPBCC_4 (cd07822), Usp (pfam00582)