myRT

myRT report for GCA_003328015.1_ASM332801v1

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Seq: QETP01000030.1 Escherichia coli strain E543 Scaffold29_1, whole genome shotgun sequence (62402 bp)
Overview 1 RT 1: 1-4710 bp Neighborhood of RT #1 [1, 4808] RhsA RVT-GII group_II_RT_mat YhhI YhhI YhhI Feature: gene Location: 1-1128 bp Feature: domain Description: RhsA Location: 4-694 bp Feature: domain Description: RhsA Location: 4-694 bp Feature: gene Location: 1129-1527 bp Feature: gene Location: 1971-3050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2442-3033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2442-3033 bp Feature: gene Location: 3072-3323 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3078-3306 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3078-3306 bp Feature: gene Location: 3687-4808 bp Feature: domain Description: YhhI Location: 3693-4038 bp Feature: domain Description: YhhI Location: 3693-4038 bp Feature: domain Description: YhhI Location: 4095-4449 bp Feature: domain Description: YhhI Location: 4095-4449 bp Feature: domain Description: YhhI Location: 4467-4710 bp Feature: domain Description: YhhI Location: 4467-471 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), RVT-GII, group_II_RT_mat (TIGR04416), YhhI (COG5433)

Seq: QETP01000031.1 Escherichia coli strain E543 Scaffold30_1, whole genome shotgun sequence (57723 bp)
Overview 1 RT 1: 46871-50647 bp Neighborhood of RT #1 [46871, 50647] PRK13732 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 46871-47398 bp Feature: domain Description: PRK13732 Location: 46874-47396 bp Feature: domain Description: PRK13732 Location: 46874-47396 bp Feature: gene Location: 47519-47992 bp Feature: gene Location: 48566-50233 bp Feature: RT Description: RVT_N Location: 48614-48851 bp Feature: RT Description: RVT_N Location: 48614-48851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48902-49544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48902 -49544 bp Feature: domain Description: GIIM Note: maturase Location: 49595-49829 bp Feature: domain Description: GIIM Note: maturase Location: 49595-4982 9 bp Feature: domain Description: HNHc Note: nucleases Location: 50039-50198 bp Feature: domain Description: HNHc Note: nucleases Location: 50039-50198 bp Feature: gene Location: 50211-50396 bp Feature: gene Location: 50453-50647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QETP01000059.1 Escherichia coli strain E543 Scaffold58_1, whole genome shotgun sequence (15981 bp)
Overview 1 RT 1: 9696-13678 bp Neighborhood of RT #1 [9696, 13704] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 9696-10727 bp Feature: domain Description: Asparaginase_2 Location: 9786-10719 bp Feature: domain Description: Asparaginase_2 Location: 9786-10719 bp Feature: gene Location: 11054-11203 bp Feature: gene Location: 11251-11697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11557-11659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11557-11659 bp Feature: gene Location: 11919-12290 bp Feature: gene Location: 12343-13704 bp Feature: domain Description: DcuC Location: 12346-13678 bp Feature: domain Description: DcuC Location: 123 46-13 678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DcuC (TIGR00771), Asparaginase_2 (pfam01112)

Seq: QETP01000097.1 Escherichia coli strain E543 Scaffold95_2, whole genome shotgun sequence (2628 bp)
Overview 1 RT 1: 1-2433 bp Neighborhood of RT #1 [1, 2433] CspC RVT-Retrons Feature: gene Location: 1-438 bp Feature: gene Location: 637-840 bp Feature: domain Description: CspC Location: 640-835 bp Feature: domain Description: CspC Location: 64 0-835 bp Feature: gene Location: 845-1984 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 989-1544 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 989-154 4 bp Feature: gene Location: 2006-2188 bp Feature: gene Location: 2278-2433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CspC (COG1278), RVT-Retrons