myRT

myRT report for GCA_003328175.1_ASM332817v1

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Seq: QETO01000010.1 Escherichia coli strain E565 Scaffold10_1, whole genome shotgun sequence (186072 bp)
Overview 1 RT 1: 51252-55134 bp Neighborhood of RT #1 [51252, 55139] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51252-51710 bp Feature: domain Description: dut Location: 51258-51705 bp Feature: domain Description: dut Location: 51 258-51 705 bp Feature: gene Location: 51817-52413 bp Feature: domain Description: slmA Location: 51823-52399 bp Feature: domain Description: slmA Location: 51 823-52399 bp Feature: gene Location: 52459-53418 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52594-53143 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52594-531 43 bp Feature: gene Location: 53716-54372 bp Feature: domain Description: pyrE Location: 53734-54367 bp Feature: domain Description: pyrE Location: 53734-54367 bp Feature: gene Location: 54423-55139 bp Feature: domain Description: rph Location: 54426-55134 bp Feature: domain Description: rph Location: 54426-551 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: QETO01000029.1 Escherichia coli strain E565 Scaffold29_1, whole genome shotgun sequence (40883 bp)
Overview 1 RT 1: 3637-7365 bp Neighborhood of RT #1 [3637, 7370] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 3637-3843 bp Feature: gene Location: 4177-4386 bp Feature: gene Location: 4521-6422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4788-5619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4788-5619 bp Feature: domain Description: Intron_maturas2 Location: 5733-5991 bp Feature: domain Description: Intron_maturas2 Location: 5733-5991 bp Feature: domain Description: HNHc Note: nucleases Location: 6165-6327 bp Feature: domain Description: HNHc Note: nucleases Location: 6165-632 7 bp Feature: gene Location: 6617-7069 bp Feature: domain Description: PRK13732 Location: 6623-7067 bp Feature: domain Description: PRK13732 Location: 662 3-7067 bp Feature: gene Location: 7137-7370 bp Feature: domain Description: DUF905 Location: 7167-7365 bp Feature: domain Description: DUF905 Location: 7167-7365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: QETO01000003.1 Escherichia coli strain E565 Scaffold3_1, whole genome shotgun sequence (318282 bp)
Overview 1 RT 1: 164185-169133 bp Neighborhood of RT #1 [164185, 169133] DUF5405 Phage_GPA RVT-AbiP2 Feature: gene Location: 164185-164460 bp Feature: domain Description: DUF5405 Location: 164203-164443 bp Feature: domain Description: DUF5405 Location: 164203 -164443 bp Feature: gene Location: 164408-166735 bp Feature: domain Description: Phage_GPA Location: 164849-165836 bp Feature: domain Description: Phage_GPA Location: 164849-16583 6 bp Feature: gene Location: 166839-168551 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 167421-167874 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 167421-167874 bp Feature: gene Location: 168564-168725 bp Feature: gene Location: 168888-169133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-AbiP2