myRT

myRT report for GCA_003328275.1_ASM332827v1

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Seq: QEUA01000028.1 Escherichia coli strain E175 Scaffold28_1, whole genome shotgun sequence (57363 bp)
Overview 1 RT 1: 176-2931 bp Neighborhood of RT #1 [176, 2933] RVT-GII GIIM YhhI YhhI PRK01271 Feature: gene Location: 176-1675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 629-1286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 629-1 286 bp Feature: domain Description: GIIM Note: maturase Location: 1370-1580 bp Feature: domain Description: GIIM Note: maturase Location: 1 370-1 580 bp Feature: gene Location: 1882-2673 bp Feature: domain Description: YhhI Location: 1885-2248 bp Feature: domain Description: YhhI Location: 1 885-2248 bp Feature: domain Description: YhhI Location: 2305-2656 bp Feature: domain Description: YhhI Location: 2305-2656 bp Feature: gene Location: 2706-2933 bp Feature: domain Description: PRK01271 Location: 2709-2931 bp Feature: domain Description: PRK01 271 Location: 2709-2931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YhhI (COG5433), PRK01271 (tautomerase PptA)

Seq: QEUA01000033.1 Escherichia coli strain E175 Scaffold33_1, whole genome shotgun sequence (51099 bp)
Overview 1 RT 1: 1-4865 bp Neighborhood of RT #1 [1, 4867] Caudo_TAP RVT-UG17 SLATT_5 prfC Feature: gene Location: 1-585 bp Feature: domain Description: Caudo_TAP Location: 217-574 bp Feature: domain Description: Caudo_TAP Location: 2 17-574 bp Feature: gene Location: 698-2068 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 926-1532 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 92 6-1532 bp Feature: gene Location: 2046-2750 bp Feature: domain Description: SLATT_5 Location: 2208-2718 bp Feature: domain Description: SLATT_5 Location: 2 2 08-2 718 bp Feature: gene Location: 3281-4867 bp Feature: domain Description: prfC Location: 3299-4865 bp Feature: domain Description: prfC Location: 32 99-4865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), prfC (TIGR00503)

Seq: QEUA01000074.1 Escherichia coli strain E175 Scaffold74_1, whole genome shotgun sequence (11296 bp)
Overview 1 RT 1: 1986-6324 bp Neighborhood of RT #1 [1986, 6440] PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 1986-2153 bp Feature: gene Location: 2273-2707 bp Feature: domain Description: PHA02517 Location: 2321-2642 bp Feature: domain Description: PHA02517 Location: 23 21-2642 bp Feature: gene Location: 3299-4822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3572-4304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 572-43 04 bp Feature: domain Description: GIIM Note: maturase Location: 4379-4577 bp Feature: domain Description: GIIM Note: maturase Location: 43 79-4577 bp Feature: gene Location: 4951-5145 bp Feature: domain Description: PHA02517 Location: 4954-5110 bp Feature: domain Description: PHA02517 Location: 4954-5110 bp Feature: gene Location: 5364-6440 bp Feature: domain Description: COG3547 Location: 5403-6324 bp Feature: domain Description: COG3 547 Location: 5403 -63 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )