myRT

myRT report for GCA_003333385.1_ASM333338v1

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Seq: QOZD01000061.1 Escherichia coli strain MOD1-ECOR71 ECOR71_61_length_10995_cov_41.3526, whole genome shotgun sequence (10995 bp)
Overview 1 RT 1: 8038-10928 bp Neighborhood of RT #1 [8038, 10987] TnpB_IS66 RVT_N RVT-GII YkfC HNHc Csm1_N Csm1_N Feature: gene Location: 8038-8349 bp Feature: domain Description: TnpB_IS66 Location: 8065-8344 bp Feature: domain Description: TnpB_IS66 Location: 8065-8344 bp Feature: gene Location: 8556-8696 bp Feature: gene Location: 8947-10617 bp Feature: RT Description: RVT_N Location: 8995-9238 bp Feature: RT Description: RVT_N Location: 8995-9238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9283-9925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9283-9925 bp Feature: domain Description: YkfC Location: 10057-10237 bp Feature: domain Description: YkfC Location: 1 0057-1 0237 bp Feature: domain Description: HNHc Note: nucleases Location: 10423-10582 bp Feature: domain Description: HNHc Note: nucleases Location: 1 0423-1 0582 bp Feature: gene Location: 10760-10987 bp Feature: domain Description: Csm1_N Location: 10775-10841 bp Feature: domain Description: Csm1 _N Location: 1 0775-1 0841 bp Feature: domain Description: Csm1_N Location: 10850-10928 bp Feature: domain Description: Csm1 _N Location: 1 0850-1 0928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csm1_N (pfam18504), TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: QOZD01000008.1 Escherichia coli strain MOD1-ECOR71 ECOR71_8_length_147842_cov_60.66, whole genome shotgun sequence (147840 bp)
Overview 1 RT 1: 130924-134806 bp Neighborhood of RT #1 [130924, 134811] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 130924-131640 bp Feature: domain Description: rph Location: 130927-131635 bp Feature: domain Description: rph Location: 13092 7-131635 bp Feature: gene Location: 131691-132347 bp Feature: domain Description: pyrE Location: 131709-132342 bp Feature: domain Description: pyrE Location: 131709-132 342 bp Feature: gene Location: 132645-133604 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132780-133329 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132 780-13332 9 bp Feature: gene Location: 133650-134246 bp Feature: domain Description: slmA Location: 133656-134232 bp Feature: domain Description: slmA Location: 133656-1342 32 bp Feature: gene Location: 134353-134811 bp Feature: domain Description: dut Location: 134359-134806 bp Feature: domain Description: dut Location: 134359-134806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)