myRT

myRT report for GCA_003333675.1_ASM333367v1

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Seq: QOYJ01000010.1 Escherichia coli strain MOD1-ECOR50 ECOR50_10_length_129097_cov_20.073, whole genome shotgun sequence (129097 bp)
Overview 1 RT 1: 19796-26039 bp Neighborhood of RT #1 [19796, 26176] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 19796-20062 bp Feature: domain Description: Phage_integrase Location: 19862-19958 bp Feature: domain Description: Phage_integrase Location: 1 9862-1 9958 bp Feature: gene Location: 20145-20615 bp Feature: gene Location: 20962-24171 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 21490-21979 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 21 490-21 979 bp Feature: domain Description: nitrilase Location: 23485-24082 bp Feature: domain Description: nitrilase Location: 23485-24082 bp Feature: gene Location: 24466-25269 bp Feature: domain Description: AbiEi_3_N Location: 24499-24760 bp Feature: domain Description: AbiEi_3_N Location: 24499-24760 bp Feature: domain Description: AbiEi_3 Location: 24772-25228 bp Feature: domain Description: AbiEi_3 Location: 24772-25228 bp Feature: gene Location: 25256-26176 bp Feature: domain Description: AbiEii Location: 25298-26039 bp Feature: domain Description: AbiEii Location: 25298-26039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: QOYJ01000132.1 Escherichia coli strain MOD1-ECOR50 ECOR50_132_length_2821_cov_18.0962, whole genome shotgun sequence (2820 bp)
Overview 1 RT 1: 168-2754 bp Neighborhood of RT #1 [168, 2819] RVT-GII GIIM PHA02517 Feature: gene Location: 168-1691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-1173 bp Feature: domain Description: GIIM Note: maturase Location: 1248-1446 bp Feature: domain Description: GIIM Note: maturase Location: 12 48-1446 bp Feature: gene Location: 2283-2819 bp Feature: domain Description: PHA02517 Location: 2400-2754 bp Feature: domain Description: PHA02 517 Location: 2 400-2 754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: QOYJ01000053.1 Escherichia coli strain MOD1-ECOR50 ECOR50_53_length_27755_cov_20.3142, whole genome shotgun sequence (27755 bp)
Overview 1 RT 1: 18317-22600 bp Neighborhood of RT #1 [18317, 22608] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 18317-19222 bp Feature: gene Location: 19360-19551 bp Feature: gene Location: 19708-20247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20038-20116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2003 8-20116 bp Feature: gene Location: 20275-20796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20281-20563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20281-20563 bp Feature: domain Description: GIIM Note: maturase Location: 20611-20791 bp Feature: domain Description: GIIM Note: maturase Location: 20611-20791 bp Feature: gene Location: 21118-21306 bp Feature: gene Location: 21346-22608 bp Feature: domain Description: YesM Location: 21859-22600 bp Feature: domain Description: YesM Location: 21859-22600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)