myRT

myRT report for GCA_003334085.1_ASM333408v1

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Seq: QOXJ01000015.1 Escherichia coli strain MOD1-ECOR24 ECOR24_15_length_104924_cov_91.8529, whole genome shotgun sequence (104924 bp)
Overview 1 RT 1: 10248-15676 bp Neighborhood of RT #1 [10248, 15676] RVT-UG5 nitrilase PRK09692 Feature: gene Location: 10248-10391 bp Feature: gene Location: 10397-11086 bp Feature: gene Location: 11083-13959 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11557-12085 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 1 557-1 2085 bp Feature: domain Description: nitrilase Location: 13297-13879 bp Feature: domain Description: nitrilase Location: 1 3297-1 3879 bp Feature: gene Location: 14051-15307 bp Feature: domain Description: PRK09692 Location: 14060-15263 bp Feature: domain Description: PRK09692 Location: 1 4060-1 5263 bp Feature: gene Location: 15452-15676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional)

Seq: QOXJ01000018.1 Escherichia coli strain MOD1-ECOR24 ECOR24_18_length_85588_cov_91.9378, whole genome shotgun sequence (85588 bp)
Overview 1 RT 1: 51354-55236 bp Neighborhood of RT #1 [51354, 55241] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51354-51812 bp Feature: domain Description: dut Location: 51360-51807 bp Feature: domain Description: dut Location: 51360-51807 bp Feature: gene Location: 51919-52515 bp Feature: domain Description: slmA Location: 51925-52501 bp Feature: domain Description: slmA Location: 5192 5-52 501 bp Feature: gene Location: 52561-53520 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52696-53245 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52 696-532 45 bp Feature: gene Location: 53818-54474 bp Feature: domain Description: pyrE Location: 53836-54469 bp Feature: domain Description: pyrE Location: 53836-54469 bp Feature: gene Location: 54525-55241 bp Feature: domain Description: rph Location: 54528-55236 bp Feature: domain Description: rph Location: 5452 8-552 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: QOXJ01000035.1 Escherichia coli strain MOD1-ECOR24 ECOR24_35_length_34138_cov_91.2058, whole genome shotgun sequence (34138 bp)
Overview 1 RT 1: 15631-19922 bp Neighborhood of RT #1 [15631, 19922] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 15631-16893 bp Feature: domain Description: YesM Location: 16144-16885 bp Feature: domain Description: YesM Location: 16144-16885 bp Feature: gene Location: 16923-17093 bp Feature: gene Location: 17443-17964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17449-17731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17449-1773 1 bp Feature: domain Description: GIIM Note: maturase Location: 17779-17959 bp Feature: domain Description: GIIM Note: maturase Location: 17779-17959 bp Feature: gene Location: 17992-18531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18322-18400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 22-18400 bp Feature: gene Location: 18562-18759 bp Feature: gene Location: 19017-19922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: QOXJ01000053.1 Escherichia coli strain MOD1-ECOR24 ECOR24_53_length_11294_cov_108.769, whole genome shotgun sequence (11294 bp)
Overview 1 RT 1: 3-2828 bp Neighborhood of RT #1 [3, 2830] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C deoxyribose_mutarotase Feature: gene Location: 3-305 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12-264 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12-264 bp Feature: gene Location: 513-674 bp Feature: gene Location: 767-1999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1622 bp Feature: domain Description: GIIM Note: maturase Location: 1700-1922 bp Feature: domain Description: GIIM Note: maturase Location: 1700-1922 bp Feature: gene Location: 2115-2261 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2127-2238 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2127-2238 bp Feature: gene Location: 2291-2830 bp Feature: domain Description: deoxyribose_mutarotase Location: 2432-2828 bp Feature: domain Description: deoxyribose_mutarotase Location: 24 32-2828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), deoxyribose_mutarotase (cd09269)