myRT

myRT report for GCA_003335255.1_ASM333525v1

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Seq: QPGL01000002.1 Vibrio casei strain JB196 SAMN07141174.102, whole genome shotgun sequence (1242421 bp)
Overview 1 RT 1: 359959-363412 bp Neighborhood of RT #1 [359959, 363412] FGE-sulfatase Avd_like RVT-DGRs Feature: gene Location: 359959-361191 bp Feature: domain Description: FGE-sulfatase Location: 360454-360802 bp Feature: domain Description: FGE-sulfatase Location: 360454-360802 bp Feature: gene Location: 361254-361619 bp Feature: domain Description: Avd_like Location: 361293-361590 bp Feature: domain Description: Avd_like Location: 361 293-361 590 bp Feature: gene Location: 361577-362878 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 362048-362669 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 362048-362669 bp Feature: gene Location: 362875-363201 bp Feature: gene Location: 363185-363412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs

Seq: QPGL01000004.1 Vibrio casei strain JB196 SAMN07141174.104, whole genome shotgun sequence (165398 bp)
Overview 1 RT 1: 4294-13837 bp Neighborhood of RT #1 [4294, 14004] LolA_like COG1033 RVT-GII GIIM PRK12316 Lys2b Feature: gene Location: 4294-5049 bp Feature: domain Description: LolA_like Location: 4360-5035 bp Feature: domain Description: LolA_like Location: 4360-5035 bp Feature: gene Location: 5060-7537 bp Feature: domain Description: COG1033 Location: 5237-7499 bp Feature: domain Description: COG1033 Location: 52 37-7499 bp Feature: gene Location: 7687-8961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7900-8521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7900-852 1 bp Feature: domain Description: GIIM Note: maturase Location: 8572-8791 bp Feature: domain Description: GIIM Note: maturase Location: 8572 -8791 bp Feature: gene Location: 9020-9169 bp Feature: gene Location: 9751-14004 bp Feature: domain Description: PRK12316 Location: 9772-12838 bp Feature: domain Description: PRK12 316 Location: 9772 -12 838 bp Feature: domain Description: Lys2b Location: 12928-13837 bp Feature: domain Description: Lys2 b Location: 12 92 8-13837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LolA_like (pfam17131), COG1033 (Predicted exporter protein, RND superfamily ), RVT-GII, GIIM (pfam08388), PRK12316 (peptide synthase; Provisional), Lys2b (COG3320)