myRT

myRT report for GCA_003335725.1_ASM333572v1

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Seq: QOJH01000206.1 Enterococcus faecium strain IHC22 IHC22_contig_170_consensus_1, whole genome shotgun sequence (2685 bp)
Overview 1 RT 1: 745-1744 bp Neighborhood of RT #1 [745, 2571] RVT-GII Feature: gene Location: 745-2571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 045-1 744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QOJH01000136.1 Enterococcus faecium strain IHC22 IHC22_contig_217_consensus_1, whole genome shotgun sequence (1008 bp)
Overview 1 RT 1: 1-742 bp Neighborhood of RT #1 [1, 1005] RVT-AbiP2 Feature: gene Location: 1-1005 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 277-742 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 77-742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2

Seq: QOJH01000430.1 Enterococcus faecium strain IHC22 IHC22_contig_220_consensus_1, whole genome shotgun sequence (26309 bp)
Overview 1 RT 1: 14069-20900 bp Neighborhood of RT #1 [14069, 20908] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 14069-14950 bp Feature: domain Description: CcmA Location: 14072-14942 bp Feature: domain Description: CcmA Location: 14072-14942 bp Feature: gene Location: 15204-15803 bp Feature: domain Description: AcrR Location: 15222-15708 bp Feature: domain Description: AcrR Location: 15222-15708 bp Feature: gene Location: 16290-17678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16611-17226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16611-17226 bp Feature: domain Description: GIIM Note: maturase Location: 17283-17499 bp Feature: domain Description: GIIM Note: maturase Location: 17283 -17499 bp Feature: gene Location: 17771-19207 bp Feature: domain Description: CE4_DAC_u3_5s Location: 18575-18968 bp Feature: domain Description: CE4_DAC_u3 _5s Location: 18575-18968 bp Feature: gene Location: 19652-20908 bp Feature: domain Description: PRK13354 Location: 19655-20900 bp Feature: domain Description: PRK13 3 54 Location: 19655-20900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), AcrR (COG1309), RVT-GII, GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)

Seq: QOJH01000209.1 Enterococcus faecium strain IHC22 IHC22_contig_299_consensus_1, whole genome shotgun sequence (2714 bp)
Overview 1 RT 1: 123-2331 bp Neighborhood of RT #1 [123, 2331] RVT-GII HNHc Feature: gene Location: 123-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 32-1173 bp Feature: domain Description: HNHc Note: nucleases Location: 1728-1866 bp Feature: domain Description: HNHc Note: nucleases Location: 1728-1866 bp Feature: gene Location: 2101-2331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QOJH01000363.1 Enterococcus faecium strain IHC22 IHC22_contig_84_consensus_1, whole genome shotgun sequence (11472 bp)
Overview 1 RT 1: 2409-6705 bp Neighborhood of RT #1 [2409, 6713] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Feature: gene Location: 2409-2558 bp Feature: gene Location: 2725-3204 bp Feature: domain Description: DUF3841 Location: 2734-3109 bp Feature: domain Description: DUF3841 Location: 2734-3109 bp Feature: gene Location: 3382-4878 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3790-4246 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3790-4246 bp Feature: gene Location: 5024-5338 bp Feature: domain Description: AlbA_2 Location: 5063-5234 bp Feature: domain Description: AlbA_2 Location: 5 063-5 234 bp Feature: gene Location: 5439-6713 bp Feature: domain Description: PRK09290 Location: 5457-6705 bp Feature: domain Description: PRK09290 Location: 5 45 7-6705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed)

Seq: QOJH01000266.1 Enterococcus faecium strain IHC22 IHC22_contig_9_consensus_1, whole genome shotgun sequence (4482 bp)
Overview 1 RT 1: 131-4481 bp Neighborhood of RT #1 [131, 4481] RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 131-2041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 4-1202 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1922 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1922 bp Feature: gene Location: 2825-4030 bp Feature: domain Description: HTH_XRE Location: 2870-3014 bp Feature: domain Description: HTH_XRE Location: 2870-3014 bp Feature: domain Description: Rol_Rep_N Location: 3041-3308 bp Feature: domain Description: Rol_Rep_N Location: 3041-3308 bp Feature: domain Description: Rep_trans Location: 3332-3941 bp Feature: domain Description: Rep_trans Location: 3332-3941 bp Feature: gene Location: 4209-4481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)