myRT

myRT report for GCA_003335735.1_ASM333573v1

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Seq: QOJI01000020.1 Enterococcus faecium strain IHC23 IHC23_contig_116_consensus_1, whole genome shotgun sequence (32089 bp)
Overview 1 RT 1: 4-5334 bp Neighborhood of RT #1 [4, 5405] AAA_10 RVT-GII AAA_10 TcpE Feature: gene Location: 4-822 bp Feature: domain Description: AAA_10 Location: 10-808 bp Feature: domain Description: AAA_1 0 Location: 1 0-808 bp Feature: gene Location: 956-2782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1256-1955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 256-1 955 bp Feature: gene Location: 3479-5029 bp Feature: domain Description: AAA_10 Location: 4808-4991 bp Feature: domain Description: AAA_1 0 Location: 4808-4991 bp Feature: gene Location: 5016-5405 bp Feature: domain Description: TcpE Location: 5034-5334 bp Feature: domain Description: TcpE Location: 5034-5334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648)

Seq: QOJI01000268.1 Enterococcus faecium strain IHC23 IHC23_contig_34_consensus_1, whole genome shotgun sequence (28775 bp)
Overview 1 RT 1: 6192-11750 bp Neighborhood of RT #1 [6192, 11758] Dcm FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 6192-7334 bp Feature: domain Description: Dcm Location: 6195-7308 bp Feature: domain Description: Dcm Location: 6195-7308 bp Feature: gene Location: 7379-7759 bp Feature: domain Description: FtsK Location: 7394-7634 bp Feature: domain Description: FtsK Location: 7394-7634 bp Feature: gene Location: 7861-9735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8227-8923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 2 7-892 3 bp Feature: domain Description: HNHc Note: nucleases Location: 9463-9622 bp Feature: domain Description: HNHc Note: nucleases Location: 9463-962 2 bp Feature: gene Location: 10329-11360 bp Feature: domain Description: FtsK_SpoIIIE Location: 11001-11241 bp Feature: domain Description: FtsK_SpoIIIE Location: 11001-112 41 bp Feature: gene Location: 11414-11758 bp Feature: domain Description: RelB_DinJ Location: 11624-11750 bp Feature: domain Description: RelB_DinJ Location: 1162 4-11750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), FtsK (COG1674), RVT-GII, HNHc (smart00507), FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384)

Seq: QOJI01000422.1 Enterococcus faecium strain IHC23 IHC23_contig_72_consensus_1, whole genome shotgun sequence (2747 bp)
Overview 1 RT 1: 319-2503 bp Neighborhood of RT #1 [319, 2616] RVT-GII HNHc Feature: gene Location: 319-552 bp Feature: gene Location: 739-2616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: domain Description: HNHc Note: nucleases Location: 2350-2503 bp Feature: domain Description: HNHc Note: nucleases Location: 23 50-2503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QOJI01000448.1 Enterococcus faecium strain IHC23 IHC23_contig_96_consensus_1, whole genome shotgun sequence (3258 bp)
Overview 1 RT 1: 1-2594 bp Neighborhood of RT #1 [1, 3256] HsdM RVT-AbiP2 Feature: gene Location: 1-1464 bp Feature: domain Description: HsdM Location: 22-1447 bp Feature: domain Description: HsdM Location: 22-14 4 7 bp Feature: gene Location: 1802-3256 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2129-2594 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2129-2594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2