myRT

myRT report for GCA_003335825.1_ASM333582v1

Download annotations/find similar RTs

Seq: QOJL01000390.1 Enterococcus faecium strain IHC120 IHC120_contig_109_consensus_1, whole genome shotgun sequence (14935 bp)
Overview 1 RT 1: 4653-14609 bp Neighborhood of RT #1 [4653, 14728] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc Feature: gene Location: 4653-4997 bp Feature: domain Description: RelB_DinJ Location: 4863-4989 bp Feature: domain Description: RelB_DinJ Location: 4863-4989 bp Feature: gene Location: 5066-6082 bp Feature: domain Description: FtsK_SpoIIIE Location: 5723-5963 bp Feature: domain Description: FtsK_SpoIIIE Location: 5723-5963 bp Feature: gene Location: 6676-8550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7042-7738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7042-7738 bp Feature: domain Description: HNHc Note: nucleases Location: 8278-8437 bp Feature: domain Description: HNHc Note: nucleases Location: 8278-8437 bp Feature: gene Location: 8652-9032 bp Feature: domain Description: FtsK Location: 8667-8907 bp Feature: domain Description: FtsK Location: 8667-8907 bp Feature: gene Location: 9077-10219 bp Feature: domain Description: Dcm Location: 9080-10193 bp Feature: domain Description: Dcm Location: 9080-1 01 93 bp Feature: gene Location: 10754-11938 bp Feature: domain Description: HTH_XRE Location: 10784-10928 bp Feature: domain Description: HTH_XRE Location: 1 0784-1 0928 bp Feature: domain Description: Rol_Rep_N Location: 10961-11225 bp Feature: domain Description: Rol_Rep_N Location: 1 0961 -1 1 225 bp Feature: domain Description: Rep_trans Location: 11249-11861 bp Feature: domain Description: Rep_trans Location: 1 1 249-1 1 861 bp Feature: gene Location: 12818-14728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13151-13889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 51 -1 3889 bp Feature: domain Description: HNHc Note: nucleases Location: 14444-14609 bp Feature: domain Description: HNHc Note: nucleases Location: 1 4444-1 4609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII, HNHc (smart00507), FtsK (COG1674), Dcm (COG0270), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: QOJL01000327.1 Enterococcus faecium strain IHC120 IHC120_contig_122_consensus_1, whole genome shotgun sequence (8346 bp)
Overview 1 RT 1: 5742-8346 bp Neighborhood of RT #1 [5742, 8345] RelB_DinJ FtsK_SpoIIIE RVT-GII Feature: gene Location: 5742-6077 bp Feature: domain Description: RelB_DinJ Location: 5946-6069 bp Feature: domain Description: RelB_DinJ Location: 5946-6069 bp Feature: gene Location: 6139-7176 bp Feature: domain Description: FtsK_SpoIIIE Location: 6811-7057 bp Feature: domain Description: FtsK_SpoIIIE Location: 6811-7057 bp Feature: gene Location: 7770-8345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8136-8346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8136-8346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII

Seq: QOJL01000308.1 Enterococcus faecium strain IHC120 IHC120_contig_282_consensus_1, whole genome shotgun sequence (7104 bp)
Overview 1 RT 1: 2-4847 bp Neighborhood of RT #1 [2, 4852] RVT-GII HNHc RVT-GII HNHc Zeta_toxin Feature: gene Location: 2-496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-3 47 bp Feature: gene Location: 664-1155 bp Feature: domain Description: HNHc Note: nucleases Location: 874-1042 bp Feature: domain Description: HNHc Note: nucleases Location: 874-1042 bp Feature: gene Location: 1257-1415 bp Feature: gene Location: 1781-2011 bp Feature: gene Location: 2130-3989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2439-3180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243 9-3 180 bp Feature: domain Description: HNHc Note: nucleases Location: 3735-3873 bp Feature: domain Description: HNHc Note: nucleases Location: 3 73 5-3 873 bp Feature: gene Location: 4083-4325 bp Feature: gene Location: 4412-4852 bp Feature: domain Description: Zeta_toxin Location: 4490-4847 bp Feature: domain Description: Zeta_toxin Location: 4490-4847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Zeta_toxin (pfam06414)

Seq: QOJL01000252.1 Enterococcus faecium strain IHC120 IHC120_contig_31_consensus_1, whole genome shotgun sequence (4054 bp)
Overview 1 RT 1: 3-3953 bp Neighborhood of RT #1 [3, 3982] RVT-AbiP2 HsdM Rve Feature: gene Location: 3-1457 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 330-795 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 330-795 bp Feature: gene Location: 1795-3273 bp Feature: domain Description: HsdM Location: 1816-3241 bp Feature: domain Description: HsdM Location: 1816-324 1 bp Feature: gene Location: 3296-3982 bp Feature: domain Description: Rve Location: 3305-3953 bp Feature: domain Description: Rve Location: 3305-3953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286), Rve (COG3316)