myRT

myRT report for GCA_003335835.1_ASM333583v1

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Seq: QOJM01000187.1 Enterococcus faecium strain IHC123 IHC123_contig_36_consensus_1, whole genome shotgun sequence (6073 bp)
Overview 1 RT 1: 3-4675 bp Neighborhood of RT #1 [3, 4749] RVT-AbiP2 Transposase_mut HsdM Feature: gene Location: 3-1457 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 330-795 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 330-795 bp Feature: gene Location: 1636-2808 bp Feature: domain Description: Transposase_mut Location: 1639-2776 bp Feature: domain Description: Transposase_mut Location: 1 639-2776 bp Feature: gene Location: 3127-4749 bp Feature: domain Description: HsdM Location: 3148-4675 bp Feature: domain Description: HsdM Location: 31 48-4675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, Transposase_mut (pfam00872), HsdM (COG0286)

Seq: QOJM01000213.1 Enterococcus faecium strain IHC123 IHC123_contig_6_consensus_1, whole genome shotgun sequence (52784 bp)
Overview 1 RT 1: 39760-50665 bp Neighborhood of RT #1 [39760, 50679] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 39760-40104 bp Feature: domain Description: RelB_DinJ Location: 39970-40096 bp Feature: domain Description: RelB_DinJ Location: 39970-40096 bp Feature: gene Location: 40173-41189 bp Feature: domain Description: FtsK_SpoIIIE Location: 40830-41070 bp Feature: domain Description: FtsK_SpoIIIE Location: 40830-41070 bp Feature: gene Location: 41783-43657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42149-42845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 149-42 845 bp Feature: domain Description: HNHc Note: nucleases Location: 43385-43544 bp Feature: domain Description: HNHc Note: nucleases Location: 43385-43544 bp Feature: gene Location: 43759-44139 bp Feature: domain Description: FtsK Location: 43774-44014 bp Feature: domain Description: FtsK Location: 43774-44014 bp Feature: gene Location: 44184-45326 bp Feature: domain Description: Dcm Location: 44187-45300 bp Feature: domain Description: Dcm Location: 44187-45300 bp Feature: gene Location: 45861-47045 bp Feature: domain Description: HTH_XRE Location: 45891-46035 bp Feature: domain Description: HTH_XRE Location: 45891-46035 bp Feature: domain Description: Rol_Rep_N Location: 46068-46332 bp Feature: domain Description: Rol_Rep_N Location: 46068-46332 bp Feature: domain Description: Rep_trans Location: 46356-46968 bp Feature: domain Description: Rep_trans Location: 46356-46968 bp Feature: gene Location: 47925-49835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48258-48996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482 58-48996 bp Feature: domain Description: HNHc Note: nucleases Location: 49551-49716 bp Feature: domain Description: HNHc Note: nucleases Location: 49551-49716 bp Feature: gene Location: 50023-50163 bp Feature: gene Location: 50176-50679 bp Feature: domain Description: ArdA Location: 50194-50665 bp Feature: domain Description: ArdA Location: 50194-50665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII, HNHc (smart00507), FtsK (COG1674), Dcm (COG0270), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275)