myRT

myRT report for GCA_003335855.1_ASM333585v1

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Seq: QOJO01000132.1 Enterococcus faecium strain IHC128 IHC128_contig_180_consensus_1, whole genome shotgun sequence (3467 bp)
Overview 1 RT 1: 2-2803 bp Neighborhood of RT #1 [2, 3465] Rve HsdM RVT-AbiP2 Feature: gene Location: 2-172 bp Feature: domain Description: Rve Location: 5-143 bp Feature: domain Description: Rve Location: 5-1 43 bp Feature: gene Location: 195-1673 bp Feature: domain Description: HsdM Location: 216-1641 bp Feature: domain Description: HsdM Location: 21 6-1 641 bp Feature: gene Location: 2011-3465 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2338-2803 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2338-2803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), HsdM (COG0286), RVT-AbiP2

Seq: QOJO01000271.1 Enterococcus faecium strain IHC128 IHC128_contig_32_consensus_1, whole genome shotgun sequence (26221 bp)
Overview 1 RT 1: 4793-9190 bp Neighborhood of RT #1 [4793, 9882] MazE RVT-GII HNHc VirB4 Feature: gene Location: 4793-5056 bp Feature: domain Description: MazE Location: 4814-5051 bp Feature: domain Description: MazE Location: 4814-5051 bp Feature: gene Location: 5115-5435 bp Feature: gene Location: 5623-7500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5938-6676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5938-6676 bp Feature: domain Description: HNHc Note: nucleases Location: 7234-7387 bp Feature: domain Description: HNHc Note: nucleases Location: 72 34-7387 bp Feature: gene Location: 7687-7920 bp Feature: gene Location: 8188-9882 bp Feature: domain Description: VirB4 Location: 8506-9190 bp Feature: domain Description: VirB4 Location: 8506-9190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MazE (COG2336), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: QOJO01000292.1 Enterococcus faecium strain IHC128 IHC128_contig_54_consensus_1, whole genome shotgun sequence (39819 bp)
Overview 1 RT 1: 17823-23176 bp Neighborhood of RT #1 [17823, 23190] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 17823-18113 bp Feature: gene Location: 18372-19556 bp Feature: domain Description: HTH_XRE Location: 18402-18546 bp Feature: domain Description: HTH_XRE Location: 18402-18546 bp Feature: domain Description: Rol_Rep_N Location: 18579-18843 bp Feature: domain Description: Rol_Rep_N Location: 18579-18843 bp Feature: domain Description: Rep_trans Location: 18867-19479 bp Feature: domain Description: Rep_trans Location: 18867-19479 bp Feature: gene Location: 20436-22346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20769-21507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20769-21507 bp Feature: domain Description: HNHc Note: nucleases Location: 22062-22227 bp Feature: domain Description: HNHc Note: nucleases Location: 22062-22227 bp Feature: gene Location: 22534-22674 bp Feature: gene Location: 22687-23190 bp Feature: domain Description: ArdA Location: 22705-23176 bp Feature: domain Description: ArdA Location: 22705-23 176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)