myRT

myRT report for GCA_003336485.1_ASM333648v1

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Seq: QENH01000185.1 Methanophagales archaeon isolate CONS3730B06UFb1 Ga0123266_1017, whole genome shotgun sequence (38760 bp)
Overview 1 RT 1: 31330-36949 bp Neighborhood of RT #1 [31330, 37023] Cas1_I-II-III TPR TPR COG4951 RVT-GII Csx1_III-U Csx1_III-U Feature: gene Location: 31330-32319 bp Feature: domain Description: Cas1_I-II-III Location: 31339-32281 bp Feature: domain Description: Cas1 _I-II-III Location: 31 339-32281 bp Feature: gene Location: 32322-34325 bp Feature: domain Description: TPR Location: 32484-32700 bp Feature: domain Description: TPR Location: 32484-32700 bp Feature: domain Description: TPR Location: 32739-32913 bp Feature: domain Description: TPR Location: 32739-3291 3 bp Feature: domain Description: COG4951 Location: 32991-33675 bp Feature: domain Description: COG4951 Location: 32991 -33675 bp Feature: gene Location: 34427-35167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34670-35162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34670-351 62 bp Feature: gene Location: 35361-35651 bp Feature: gene Location: 35749-37023 bp Feature: domain Description: Csx1_III-U Location: 35791-36490 bp Feature: domain Description: Csx1 _III-U Location: 35791 -36490 bp Feature: domain Description: Csx1_III-U Location: 36538-36949 bp Feature: domain Description: Csx1 _III-U Location: 36538-36949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas1_I-II-III (cl00656), TPR (smart00028), COG4951 (Uncharacterized protein ), RVT-GII, Csx1_III-U (cl21570)

Seq: QENH01000172.1 Methanophagales archaeon isolate CONS3730B06UFb1 Ga0123266_1031, whole genome shotgun sequence (30539 bp)
Overview 1 RT 1: 2-2723 bp Neighborhood of RT #1 [2, 2767] RVT-GII BsuPI Feature: gene Location: 2-1561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1193 bp Feature: gene Location: 1698-1973 bp Feature: gene Location: 2105-2767 bp Feature: domain Description: BsuPI Location: 2519-2723 bp Feature: domain Description: BsuPI Location: 2 519-2 72 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, BsuPI (pfam12690)

Seq: QENH01000162.1 Methanophagales archaeon isolate CONS3730B06UFb1 Ga0123266_1041, whole genome shotgun sequence (27876 bp)
Overview 1 RT 1: 2-2033 bp Neighborhood of RT #1 [2, 2041] RVT-GII DDE_Tnp_ISAZ013 Feature: gene Location: 2-1321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266-953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266-953 bp Feature: gene Location: 1458-1733 bp Feature: gene Location: 1730-2041 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 1733-2033 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 173 3 -203 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_ISAZ013 (pfam07592)

Seq: QENH01000155.1 Methanophagales archaeon isolate CONS3730B06UFb1 Ga0123266_1049, whole genome shotgun sequence (24275 bp)
Overview 1 RT 1: 19530-24052 bp Neighborhood of RT #1 [19530, 24273] FlpD HTH_40 GltD PRK05888 PRK12771 RVT-GII GIIM Feature: gene Location: 19530-20297 bp Feature: domain Description: FlpD Location: 19554-19920 bp Feature: domain Description: FlpD Location: 19554 -19920 bp Feature: domain Description: HTH_40 Location: 20124-20238 bp Feature: domain Description: HTH_4 0 Location: 20124 -20238 bp Feature: gene Location: 20294-22840 bp Feature: domain Description: GltD Location: 20300-20522 bp Feature: domain Description: GltD Location: 20300-20522 bp Feature: domain Description: PRK05888 Location: 20561-20636 bp Feature: domain Description: PRK05888 Location: 20561-20636 bp Feature: domain Description: PRK12771 Location: 20714-22259 bp Feature: domain Description: PRK12771 Location: 20714 -22259 bp Feature: gene Location: 23002-24273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23110-23767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23110-23767 bp Feature: domain Description: GIIM Note: maturase Location: 23824-24052 bp Feature: domain Description: GIIM Note: maturase Location: 23824 -24 052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FlpD (pfam02662), HTH_40 (pfam14493), GltD (COG0493), PRK05888 (NADH-quinone oxidoreductase subunit NuoI), PRK12771 (putative glutamate synthase (NADPH) small subunit; Provisional), RVT-GII, GIIM (pfam08388)

Seq: QENH01000138.1 Methanophagales archaeon isolate CONS3730B06UFb1 Ga0123266_1069, whole genome shotgun sequence (16854 bp)
Overview 1 RT 1: 9238-11535 bp Neighborhood of RT #1 [9238, 11535] DDE_Tnp_ISAZ013 DDE_Tnp_ISAZ013 RVT_N RVT-GII SbmC Feature: gene Location: 9238-9828 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 9244-9826 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 9244-9826 bp Feature: gene Location: 9819-10238 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 10092-10188 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 10092-10188 bp Feature: gene Location: 10312-10674 bp Feature: domain Description: RVT_N Location: 10381-10471 bp Feature: domain Description: RVT_N Location: 10381-10471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10480-10549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10480-105 49 bp Feature: gene Location: 10731-11228 bp Feature: domain Description: SbmC Location: 10746-11220 bp Feature: domain Description: SbmC Location: 10746-11220 bp Feature: gene Location: 11290-11535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISAZ013 (pfam07592), RVT_N (pfam13655), RVT-GII, SbmC (COG3449)

Seq: QENH01000105.1 Methanophagales archaeon isolate CONS3730B06UFb1 Ga0123266_1105, whole genome shotgun sequence (8797 bp)
Overview 1 RT 1: 1984-6409 bp Neighborhood of RT #1 [1984, 6420] RVT-GII guaA PRK09276 Feature: gene Location: 1984-2142 bp Feature: gene Location: 2208-2357 bp Feature: gene Location: 2764-3414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2767-3061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276 7-306 1 bp Feature: gene Location: 3588-5195 bp Feature: domain Description: guaA Location: 3630-5190 bp Feature: domain Description: guaA Location: 36 30-5190 bp Feature: gene Location: 5263-6420 bp Feature: domain Description: PRK09276 Location: 5269-6409 bp Feature: domain Description: PRK09276 Location: 526 9-6 409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, guaA (PRK00074), PRK09276 (LL-diaminopimelate aminotransferase; Provisional)