myRT

myRT report for GCA_003336915.1_ASM333691v1

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Seq: LUFY01000188.1 Shigella sonnei strain 2002124 scaffold11, whole genome shotgun sequence (5922 bp)
Overview 1 RT 1: 3291-5445 bp Neighborhood of RT #1 [3291, 5471] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3291-3776 bp Feature: domain Description: COG3547 Location: 3309-3741 bp Feature: domain Description: COG3547 Location: 3309-3741 bp Feature: gene Location: 3872-4039 bp Feature: gene Location: 4065-4592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4071-4215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4071 -421 5 bp Feature: domain Description: GIIM Note: maturase Location: 4293-4515 bp Feature: domain Description: GIIM Note: maturase Location: 4293-451 5 bp Feature: gene Location: 4630-4767 bp Feature: gene Location: 4782-5471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4983-5445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4983-5445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LUFY01000199.1 Shigella sonnei strain 2002124 scaffold12, whole genome shotgun sequence (4993 bp)
Overview 1 RT 1: 2033-4837 bp Neighborhood of RT #1 [2033, 4854] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 2033-2275 bp Feature: gene Location: 2447-2614 bp Feature: gene Location: 2640-3194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2646-2790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 646-2 790 bp Feature: domain Description: GIIM Note: maturase Location: 2874-3090 bp Feature: domain Description: GIIM Note: maturase Location: 2 874-3090 bp Feature: gene Location: 3204-3476 bp Feature: gene Location: 3493-4620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3793-4450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3793-4450 bp Feature: gene Location: 4633-4854 bp Feature: domain Description: Tra5 Location: 4645-4837 bp Feature: domain Description: Tra5 Location: 4645-4837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)