myRT

myRT report for GCA_003336935.1_ASM333693v1

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Seq: LUFZ01000372.1 Shigella boydii strain G1227 scaffold225, whole genome shotgun sequence (2313 bp)
Overview 1 RT 1: 27-2084 bp Neighborhood of RT #1 [27, 2104] RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 27-722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-720 bp Feature: gene Location: 735-980 bp Feature: domain Description: Tra5 Location: 771-963 bp Feature: domain Description: Tra5 Location: 771 -963 bp Feature: gene Location: 1355-2104 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1430-2084 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 430-2084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), RVT-GII, Tra5 (COG2801)

Seq: LUFZ01000482.1 Shigella boydii strain G1227 scaffold39, whole genome shotgun sequence (7606 bp)
Overview 1 RT 1: 582-2475 bp Neighborhood of RT #1 [582, 2489] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 582-1715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684-1338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684-1338 bp Feature: domain Description: GIIM Note: maturase Location: 1416-1638 bp Feature: domain Description: GIIM Note: maturase Location: 1416-1638 bp Feature: gene Location: 1831-1977 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1843-1954 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1843-1954 bp Feature: gene Location: 2004-2489 bp Feature: domain Description: COG3547 Location: 2022-2475 bp Feature: domain Description: COG3547 Location: 2 02 2 -2 475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LUFZ01000483.1 Shigella boydii strain G1227 scaffold4, whole genome shotgun sequence (11088 bp)
Overview 1 RT 1: 5639-11039 bp Neighborhood of RT #1 [5639, 11086] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 5639-7225 bp Feature: domain Description: prfC Location: 5657-7223 bp Feature: domain Description: prfC Location: 5657-7223 bp Feature: gene Location: 7445-7705 bp Feature: domain Description: PRK10597 Location: 7448-7688 bp Feature: domain Description: PRK10597 Location: 7448-7688 bp Feature: gene Location: 8065-9669 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8356-8947 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83 56-8947 bp Feature: domain Description: TIR_2 Location: 9274-9562 bp Feature: domain Description: TIR_2 Location: 9274-9562 bp Feature: gene Location: 10114-10698 bp Feature: domain Description: Caudo_TAP Location: 10330-10687 bp Feature: domain Description: Caudo_TAP Location: 103 3 0-10687 bp Feature: gene Location: 10826-11086 bp Feature: domain Description: Phage_fiber Location: 10853-10892 bp Feature: domain Description: Phage_fiber Location: 10853 -10892 bp Feature: domain Description: Phage_fiber Location: 10898-10925 bp Feature: domain Description: Phage_fiber Location: 10898-10925 bp Feature: domain Description: Phage_fiber Location: 11000-11039 bp Feature: domain Description: Phage_fiber Location: 11000-1103 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), Phage_fiber (pfam03335), prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676)