myRT

myRT report for GCA_003336975.1_ASM333697v1

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Seq: LUGA01000258.1 Shigella dysenteriae strain 51197 scaffold108, whole genome shotgun sequence (5808 bp)
Overview 1 RT 1: 2-2668 bp Neighborhood of RT #1 [2, 2682] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 2-214 bp Feature: domain Description: DDE_Tnp_IS66 Location: 29-188 bp Feature: domain Description: DDE_Tnp_IS66 Location: 29-1 88 bp Feature: gene Location: 676-1908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 877-1531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 877-1 531 bp Feature: domain Description: GIIM Note: maturase Location: 1609-1831 bp Feature: domain Description: GIIM Note: maturase Location: 1 609-1 831 bp Feature: gene Location: 2024-2170 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2036-2147 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2036-21 47 bp Feature: gene Location: 2197-2682 bp Feature: domain Description: COG3547 Location: 2215-2668 bp Feature: domain Description: COG3547 Location: 221 5-2668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: LUGA01000576.1 Shigella dysenteriae strain 51197 scaffold49, whole genome shotgun sequence (10142 bp)
Overview 1 RT 1: 6818-10058 bp Neighborhood of RT #1 [6818, 10102] PRK08943 HTH_23 InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 6818-7762 bp Feature: domain Description: PRK08943 Location: 6821-7757 bp Feature: domain Description: PRK08943 Location: 682 1-7757 bp Feature: gene Location: 7936-8604 bp Feature: domain Description: HTH_23 Location: 8044-8131 bp Feature: domain Description: HTH_2 3 Location: 8044-8131 bp Feature: domain Description: InsE Location: 8263-8455 bp Feature: domain Description: InsE Location: 82 63-8455 bp Feature: gene Location: 8746-8958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8749-8950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8749-8950 bp Feature: gene Location: 8968-9396 bp Feature: gene Location: 9410-10102 bp Feature: domain Description: DDE_Tnp_1 Location: 9416-10058 bp Feature: domain Description: DDE_Tnp_1 Location: 9416-10058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated), HTH_23 (pfam13384), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: LUGA01000611.1 Shigella dysenteriae strain 51197 scaffold80, whole genome shotgun sequence (59232 bp)
Overview 1 RT 1: 39250-42354 bp Neighborhood of RT #1 [39250, 42359] dut slmA RVT-Retrons pyrE Feature: gene Location: 39250-39708 bp Feature: domain Description: dut Location: 39256-39703 bp Feature: domain Description: dut Location: 3 9256-3 9703 bp Feature: gene Location: 39815-40411 bp Feature: domain Description: slmA Location: 39821-40397 bp Feature: domain Description: slmA Location: 3 9821-403 97 bp Feature: gene Location: 40740-41249 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40746-41241 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40746-41241 bp Feature: gene Location: 41292-41570 bp Feature: gene Location: 41703-42359 bp Feature: domain Description: pyrE Location: 41721-42354 bp Feature: domain Description: pyrE Location: 41721-423 54 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336)