myRT

myRT report for GCA_003338135.1_ASM333813v1

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Seq: QOGA01000003.1 Escherichia coli strain AVC177 scaffold_2, whole genome shotgun sequence (282429 bp)
Overview 1 RT 1: 274467-277877 bp Neighborhood of RT #1 [274467, 277882] RVT-Retrons Q Feature: gene Location: 274467-274610 bp Feature: gene Location: 274718-274858 bp Feature: gene Location: 274926-276116 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 275076-275658 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 275076-275658 bp Feature: gene Location: 276113-276820 bp Feature: gene Location: 276863-277882 bp Feature: domain Description: Q Location: 276866-277877 bp Feature: domain Description: Q Location: 276866-277877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536)

Seq: QOGA01000058.1 Escherichia coli strain AVC177 scaffold_57, whole genome shotgun sequence (12411 bp)
Overview 1 RT 1: 294-3209 bp Neighborhood of RT #1 [294, 3214] PRK09738 RVT-GII GIIM HNHc Tar PRK13752 Feature: gene Location: 294-452 bp Feature: domain Description: PRK09738 Location: 297-450 bp Feature: domain Description: PRK09738 Location: 2 97-450 bp Feature: gene Location: 577-732 bp Feature: gene Location: 847-1713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 850-1024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 850-102 4 bp Feature: domain Description: GIIM Note: maturase Location: 1075-1309 bp Feature: domain Description: GIIM Note: maturase Location: 1075-1309 bp Feature: domain Description: HNHc Note: nucleases Location: 1519-1678 bp Feature: domain Description: HNHc Note: nucleases Location: 1519-1678 bp Feature: gene Location: 1950-2663 bp Feature: domain Description: Tar Location: 1953-2646 bp Feature: domain Description: Tar Location: 1953-2 646 bp Feature: gene Location: 2780-3214 bp Feature: domain Description: PRK13752 Location: 2783-3209 bp Feature: domain Description: PRK13752 Location: 2 783-32 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Tar (COG0840), PRK13752 (mercuric resistance operon transcriptional regulator MerR)

Seq: QOGA01000007.1 Escherichia coli strain AVC177 scaffold_6, whole genome shotgun sequence (181015 bp)
Overview 1 RT 1: 22320-30021 bp Neighborhood of RT #1 [22320, 30158] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22320-23573 bp Feature: domain Description: proA Location: 22347-23538 bp Feature: domain Description: proA Location: 223 47-23 53 8 bp Feature: gene Location: 24127-24597 bp Feature: gene Location: 24944-28153 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 25472-25961 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 25472-25961 bp Feature: domain Description: nitrilase Location: 27467-28064 bp Feature: domain Description: nitrilase Location: 27467-28064 bp Feature: gene Location: 28448-29251 bp Feature: domain Description: AbiEi_3_N Location: 28481-28742 bp Feature: domain Description: AbiEi_3 _N Location: 28481-28742 bp Feature: domain Description: AbiEi_3 Location: 28754-29210 bp Feature: domain Description: AbiEi_3 Location: 28754-29210 bp Feature: gene Location: 29238-30158 bp Feature: domain Description: AbiEii Location: 29280-30021 bp Feature: domain Description: AbiEii Location: 29280-3 0021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: QOGA01000073.1 Escherichia coli strain AVC177 scaffold_72, whole genome shotgun sequence (8651 bp)
Overview 1 RT 1: 2368-6368 bp Neighborhood of RT #1 [2368, 6376] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2368-3729 bp Feature: domain Description: DcuC Location: 2371-3703 bp Feature: domain Description: DcuC Location: 2371-3703 bp Feature: gene Location: 3782-4153 bp Feature: gene Location: 4375-4821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4681-4783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 681-4 783 bp Feature: gene Location: 4869-5018 bp Feature: gene Location: 5345-6376 bp Feature: domain Description: Asparaginase_2 Location: 5435-6368 bp Feature: domain Description: Asparaginase_2 Location: 54 35-6368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: QOGA01000082.1 Escherichia coli strain AVC177 scaffold_81, whole genome shotgun sequence (6164 bp)
Overview 1 RT 1: 460-3875 bp Neighborhood of RT #1 [460, 3880] Tra5 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 460-891 bp Feature: domain Description: Tra5 Location: 466-883 bp Feature: domain Description: Tra5 Location: 466-883 bp Feature: gene Location: 1002-1232 bp Feature: gene Location: 1284-2525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1557-2289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 5 7-2289 bp Feature: domain Description: GIIM Note: maturase Location: 2364-2520 bp Feature: domain Description: GIIM Note: maturase Location: 2364-25 20 bp Feature: gene Location: 3117-3584 bp Feature: domain Description: PHA02517 Location: 3183-3522 bp Feature: domain Description: PHA025 17 Location: 3183-35 22 bp Feature: gene Location: 3581-3880 bp Feature: domain Description: InsE Location: 3611-3875 bp Feature: domain Description: InsE Location: 3611-3875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)