myRT

myRT report for GCA_003338215.1_ASM333821v1

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Seq: QOGB01000128.1 Escherichia coli strain AVC176 scaffold_127, whole genome shotgun sequence (2786 bp)
Overview 1 RT 1: 3-2782 bp Neighborhood of RT #1 [3, 2784] YhhI YhhI YhhI RVT-GII GIIM YhhI Feature: gene Location: 3-752 bp Feature: domain Description: YhhI Location: 9-144 bp Feature: domain Description: YhhI Location: 9-1 44 bp Feature: domain Description: YhhI Location: 201-555 bp Feature: domain Description: YhhI Location: 201 -555 bp Feature: domain Description: YhhI Location: 555-735 bp Feature: domain Description: YhhI Location: 555-735 bp Feature: gene Location: 780-920 bp Feature: gene Location: 1284-2534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1488-2145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 488-21 45 bp Feature: domain Description: GIIM Note: maturase Location: 2226-2448 bp Feature: domain Description: GIIM Note: maturase Location: 2226-2448 bp Feature: gene Location: 2545-2784 bp Feature: domain Description: YhhI Location: 2620-2782 bp Feature: domain Description: YhhI Location: 2620-2782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YhhI (COG5433)

Seq: QOGB01000014.1 Escherichia coli strain AVC176 scaffold_13, whole genome shotgun sequence (133185 bp)
Overview 1 RT 1: 4743-11195 bp Neighborhood of RT #1 [4743, 11195] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 4743-4994 bp Feature: gene Location: 5366-5860 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 5510-5684 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 5510-5684 bp Feature: gene Location: 6516-7616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6699-7227 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6699-72 2 7 bp Feature: gene Location: 7731-10007 bp Feature: domain Description: AAA_15 Location: 7764-8772 bp Feature: domain Description: AAA_15 Location: 7764-8772 bp Feature: gene Location: 10890-11195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: QOGB01000071.1 Escherichia coli strain AVC176 scaffold_70, whole genome shotgun sequence (8878 bp)
Overview 1 RT 1: 5239-8651 bp Neighborhood of RT #1 [5239, 8659] InsE PHA02517 RVT-GII GIIM Tra5 Feature: gene Location: 5239-5538 bp Feature: domain Description: InsE Location: 5269-5533 bp Feature: domain Description: InsE Location: 5269-553 3 bp Feature: gene Location: 5535-6002 bp Feature: domain Description: PHA02517 Location: 5601-5940 bp Feature: domain Description: PHA02517 Location: 5601-5940 bp Feature: gene Location: 6594-7835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6867-7599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6867-7599 bp Feature: domain Description: GIIM Note: maturase Location: 7674-7830 bp Feature: domain Description: GIIM Note: maturase Location: 7674-783 0 bp Feature: gene Location: 7887-8117 bp Feature: gene Location: 8228-8659 bp Feature: domain Description: Tra5 Location: 8234-8651 bp Feature: domain Description: Tra5 Location: 823 4-8651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Tra5 (COG2801)