myRT

myRT report for GCA_003338225.1_ASM333822v1

Download annotations/find similar RTs

Seq: QOGD01000003.1 Escherichia coli strain AVC171 scaffold_2, whole genome shotgun sequence (316899 bp)
Overview 1 RT 1: 13180-19967 bp Neighborhood of RT #1 [13180, 20857] Q RVT-Retrons RVT-AbiP2 Phage_GPA Feature: gene Location: 13180-14199 bp Feature: domain Description: Q Location: 13183-14194 bp Feature: domain Description: Q Location: 1 31 83-1 41 94 bp Feature: gene Location: 14242-14949 bp Feature: gene Location: 14946-16136 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15096-15678 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5096-1 5678 bp Feature: gene Location: 16687-18231 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 17104-17557 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 71 04-1 7557 bp Feature: gene Location: 18397-18657 bp Feature: gene Location: 18719-20857 bp Feature: domain Description: Phage_GPA Location: 18980-19967 bp Feature: domain Description: Phage_GPA Location: 1 8980-1 9967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840)

Seq: QOGD01000258.1 Escherichia coli strain AVC171 scaffold_257, whole genome shotgun sequence (403 bp)
Overview 1 RT 1: 2-401 bp Neighborhood of RT #1 [2, 400] RVT-GII Feature: gene Location: 2-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 242-401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 42 -401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QOGD01000078.1 Escherichia coli strain AVC171 scaffold_77, whole genome shotgun sequence (5726 bp)
Overview 1 RT 1: 219-3634 bp Neighborhood of RT #1 [219, 3639] Tra5 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 219-650 bp Feature: domain Description: Tra5 Location: 225-642 bp Feature: domain Description: Tra5 Location: 225-642 bp Feature: gene Location: 761-2284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 4-1766 bp Feature: domain Description: GIIM Note: maturase Location: 1841-2042 bp Feature: domain Description: GIIM Note: maturase Location: 1841-2042 bp Feature: gene Location: 2876-3343 bp Feature: domain Description: PHA02517 Location: 2942-3281 bp Feature: domain Description: PHA02517 Location: 2942-3 281 bp Feature: gene Location: 3340-3639 bp Feature: domain Description: InsE Location: 3370-3634 bp Feature: domain Description: InsE Location: 3 3 70-3 63 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)