myRT

myRT report for GCA_003338515.1_ASM333851v1

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Seq: QOGC01000003.1 Escherichia coli strain AVC173 scaffold_2, whole genome shotgun sequence (316811 bp)
Overview 1 RT 1: 13179-19966 bp Neighborhood of RT #1 [13179, 20856] Q RVT-Retrons RVT-AbiP2 Phage_GPA Feature: gene Location: 13179-14198 bp Feature: domain Description: Q Location: 13182-14193 bp Feature: domain Description: Q Location: 1 31 82-1 41 93 bp Feature: gene Location: 14241-14948 bp Feature: gene Location: 14945-16135 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15095-15677 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5095-1 5677 bp Feature: gene Location: 16686-18230 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 17103-17556 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 71 03-1 7556 bp Feature: gene Location: 18396-18656 bp Feature: gene Location: 18718-20856 bp Feature: domain Description: Phage_GPA Location: 18979-19966 bp Feature: domain Description: Phage_GPA Location: 1 8979-1 9966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840)

Seq: QOGC01000058.1 Escherichia coli strain AVC173 scaffold_57, whole genome shotgun sequence (8056 bp)
Overview 1 RT 1: 5247-7883 bp Neighborhood of RT #1 [5247, 8053] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 5247-5546 bp Feature: domain Description: InsE Location: 5277-5541 bp Feature: domain Description: InsE Location: 52 77-5541 bp Feature: gene Location: 5543-6010 bp Feature: domain Description: PHA02517 Location: 5609-5948 bp Feature: domain Description: PHA02 517 Location: 5609-5948 bp Feature: gene Location: 6602-8053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6875-7607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6875-7607 bp Feature: domain Description: GIIM Note: maturase Location: 7682-7883 bp Feature: domain Description: GIIM Note: maturase Location: 7682 -7883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)