myRT

myRT report for GCA_003338545.1_ASM333854v1

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Seq: QOHE01000002.1 Escherichia coli strain AVC103 scaffold_1, whole genome shotgun sequence (314652 bp)
Overview 1 RT 1: 11681-18468 bp Neighborhood of RT #1 [11681, 19358] Q RVT-Retrons RVT-AbiP2 Phage_GPA Feature: gene Location: 11681-12700 bp Feature: domain Description: Q Location: 11684-12695 bp Feature: domain Description: Q Location: 1 1 684-1 2695 bp Feature: gene Location: 12743-13450 bp Feature: gene Location: 13447-14637 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13597-14179 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 3597-1 41 79 bp Feature: gene Location: 15188-16732 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 15605-16058 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 5605-1 6058 bp Feature: gene Location: 16898-17158 bp Feature: gene Location: 17220-19358 bp Feature: domain Description: Phage_GPA Location: 17481-18468 bp Feature: domain Description: Phage_GPA Location: 1 7481 -1 8468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840)

Seq: QOHE01000269.1 Escherichia coli strain AVC103 scaffold_268, whole genome shotgun sequence (537 bp)
Overview 1 RT 1: 3-531 bp Neighborhood of RT #1 [3, 536] RVT-GII Feature: gene Location: 3-536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246-531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 46-531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QOHE01000056.1 Escherichia coli strain AVC103 scaffold_55, whole genome shotgun sequence (8056 bp)
Overview 1 RT 1: 5239-7875 bp Neighborhood of RT #1 [5239, 8054] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 5239-5538 bp Feature: domain Description: InsE Location: 5269-5533 bp Feature: domain Description: InsE Location: 5269-553 3 bp Feature: gene Location: 5535-6002 bp Feature: domain Description: PHA02517 Location: 5601-5940 bp Feature: domain Description: PHA02517 Location: 5601-5940 bp Feature: gene Location: 6594-8054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6867-7599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6867-7599 bp Feature: domain Description: GIIM Note: maturase Location: 7674-7875 bp Feature: domain Description: GIIM Note: maturase Location: 7674-7875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)