myRT

myRT report for GCA_003344375.1_ASM334437v1

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Seq: PDNX01000007.1 Prosthecochloris sp. ZM Scaffold_1, whole genome shotgun sequence (2653521 bp)
Overview 1 RT 1: 24804-27347 bp 2 RT 2: 1839241-1844217 bp 3 RT 3: 1958852-1964117 bp 4 RT 4: 2156466-2162360 bp 5 RT 5: 2197140-2205805 bp Neighborhood of RT #1 [24804, 27347] ImmA DUF4411 RVT-DGRs Neighborhood of RT #2 [1839241, 1844378] RVT_N RVT_N RVT-GII RVT-GII GIIM RVT-GII GIIM DDE_3 Neighborhood of RT #3 [1958852, 1964293] RVT-CRISPR Cas1_I-II-III DUF1887 Neighborhood of RT #4 [2156466, 2162602] RVT-GII RVT-GII RVT-GII radical_SAM_B12_BD Elp3 Neighborhood of RT #5 [2197140, 2205924] NlpD RVT-GII GIIM RT_G2_intron RVT-UNC nitrilase rve_3 Feature: gene Location: 24804-25955 bp Feature: domain Description: ImmA Location: 25194-25761 bp Feature: domain Description: ImmA Location: 251 94-25761 bp Feature: gene Location: 25952-26458 bp Feature: domain Description: DUF4411 Location: 25973-26450 bp Feature: domain Description: DUF441 1 Location: 25973-26450 bp Feature: gene Location: 26605-26919 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26614-26728 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2661 4-26728 bp Feature: gene Location: 26949-27110 bp Feature: gene Location: 27195-27347 bp Feature: gene Location: 1839241-1839438 bp Feature: gene Location: 1839547-1839834 bp Feature: domain Description: RVT_N Location: 1839592-1839829 bp Feature: domain Description: RVT_N Location: 1 839592-1 839829 bp Feature: gene Location: 1840058-1841329 bp Feature: domain Description: RVT_N Location: 1840076-1840247 bp Feature: domain Description: RVT_N Location: 1 840076-1 840247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1840292-1840778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 840292-1 840778 bp Feature: gene Location: 1841326-1842561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1841530-1842187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 841 530-1 8421 87 bp Feature: domain Description: GIIM Note: maturase Location: 1842268-1842487 bp Feature: domain Description: GIIM Note: maturase Location: 1 842268-1 842487 bp Feature: gene Location: 1842638-1843387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1842650-1842797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 842650-1 842797 bp Feature: domain Description: GIIM Note: maturase Location: 1842848-1843082 bp Feature: domain Description: GIIM Note: maturase Location: 1 842848-1 843082 bp Feature: gene Location: 1843667-1843924 bp Feature: gene Location: 1843926-1844378 bp Feature: domain Description: DDE_3 Location: 1843938-1844217 bp Feature: domain Description: DDE_3 Location: 1 843938-1 84421 7 bp Feature: gene Location: 1958852-1959112 bp Feature: gene Location: 1959380-1959604 bp Feature: gene Location: 1960005-1962197 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1960215-1960821 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 96021 5-1 960821 bp Feature: domain Description: Cas1_I-II-III Location: 1961172-1962156 bp Feature: domain Description: Cas1 _I-II-III Location: 1 961 1 72-1 9621 56 bp Feature: gene Location: 1962289-1962699 bp Feature: gene Location: 1963136-1964293 bp Feature: domain Description: DUF1887 Location: 1963382-1964117 bp Feature: domain Description: DUF1 887 Location: 1 963382-1 9641 1 7 bp Feature: gene Location: 2156466-2156609 bp Feature: gene Location: 2156851-2157009 bp Feature: gene Location: 2157048-2158370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2157303-2157996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 57303-21 57996 bp Feature: gene Location: 2158603-2158842 bp Feature: gene Location: 2158940-2159539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2158949-2159159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 58949-21 591 59 bp Feature: gene Location: 2159536-2160420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2159947-2160379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 59947-21 60379 bp Feature: gene Location: 2160557-2160745 bp Feature: gene Location: 2161193-2162602 bp Feature: domain Description: radical_SAM_B12_BD Location: 2161355-2161613 bp Feature: domain Description: radical_SAM_B1 2_BD Location: 21 61 355-21 61 61 3 bp Feature: domain Description: Elp3 Location: 2161721-2162360 bp Feature: domain Description: Elp3 Location: 21 61 721 -21 62360 bp Feature: gene Location: 2197140-2197997 bp Feature: domain Description: NlpD Location: 2197452-2197989 bp Feature: domain Description: NlpD Location: 21 97452-21 97989 bp Feature: gene Location: 2198079-2198450 bp Feature: gene Location: 2198503-2199615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2198506-2199097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 98506-21 99097 bp Feature: domain Description: GIIM Note: maturase Location: 2199148-2199379 bp Feature: domain Description: GIIM Note: maturase Location: 21 991 48-21 99379 bp Feature: gene Location: 2199706-2204406 bp Feature: domain Description: RT_G2_intron Location: 2199934-2200075 bp Feature: domain Description: RT_G2_intron Location: 21 99934-2200075 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2200504-2200855 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2200504-2200855 bp Feature: domain Description: nitrilase Location: 2203912-2204188 bp Feature: domain Description: nitrilase Location: 220391 2-22041 88 bp Feature: gene Location: 2204444-2205472 bp Feature: gene Location: 2205595-2205924 bp Feature: domain Description: rve_3 Location: 2205613-2205805 bp Feature: domain Description: rve_3 Location: 220561 3-2205805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ImmA (COG2856), DUF4411 (pfam14367), RVT-DGRs, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF1887 (pfam09002)
radical_SAM_B12_BD (cd02068), Elp3 (smart00729), NlpD (COG0739), RT_G2_intron (cd01651), RVT-UG1/RVT-UG6/RVT-UG23/RVT-DGRs(RVT-UNC), nitrilase (cl11424), rve_3 (pfam13683)