myRT

myRT report for GCA_003346595.1_ASM334659v1

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Seq: QQQL01000016.1 Klebsiella pneumoniae strain E5_Kp E5_S7__contig_16, whole genome shotgun sequence (272151 bp)
Overview 1 RT 1: 264633-271501 bp Neighborhood of RT #1 [264633, 271503] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 264633-265361 bp Feature: domain Description: FimC Location: 264681-265344 bp Feature: domain Description: FimC Location: 264681 -265344 bp Feature: gene Location: 265393-268002 bp Feature: domain Description: FimD Location: 265450-267991 bp Feature: domain Description: FimD Location: 265450-267991 bp Feature: gene Location: 268002-270080 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 268410-268854 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 26841 0-268854 bp Feature: gene Location: 270137-270577 bp Feature: domain Description: Integrase_1 Location: 270143-270359 bp Feature: domain Description: Integrase_1 Location: 2701 43-270359 bp Feature: gene Location: 270838-271503 bp Feature: domain Description: INT_P4_C Location: 270943-271501 bp Feature: domain Description: INT_P4_C Location: 270943-271 501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: QQQL01000027.1 Klebsiella pneumoniae strain E5_Kp E5_S7__contig_27, whole genome shotgun sequence (112109 bp)
Overview 1 RT 1: 17699-24151 bp Neighborhood of RT #1 [17699, 24151] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 17699-17950 bp Feature: gene Location: 17980-18816 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 18469-18640 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 18469-18640 bp Feature: gene Location: 19472-20572 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19652-20186 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19652 -2 0186 bp Feature: gene Location: 20687-22933 bp Feature: domain Description: AAA_15 Location: 20690-21698 bp Feature: domain Description: AAA_15 Location: 2 0690-2 1698 bp Feature: gene Location: 23846-24151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: QQQL01000033.1 Klebsiella pneumoniae strain E5_Kp E5_S7__contig_33, whole genome shotgun sequence (58863 bp)
Overview 1 RT 1: 43406-46590 bp Neighborhood of RT #1 [43406, 46590] PRK10276 RVT-GII Feature: gene Location: 43406-43831 bp Feature: domain Description: PRK10276 Location: 43409-43817 bp Feature: domain Description: PRK10276 Location: 43 409-43 817 bp Feature: gene Location: 43949-44182 bp Feature: gene Location: 44233-45744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44638-45352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4463 8-453 52 bp Feature: gene Location: 45630-46208 bp Feature: gene Location: 46267-46590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII